Inferring Biochemical Reactions and Metabolite Structures to Understand Metabolic Pathway Drift

Autor: Arnaud Belcour, Jean Girard, Méziane Aite, Ludovic Delage, Camille Trottier, Charlotte Marteau, Cédric Leroux, Simon M. Dittami, Pierre Sauleau, Erwan Corre, Jacques Nicolas, Catherine Boyen, Catherine Leblanc, Jonas Collén, Anne Siegel, Gabriel V. Markov

Publikováno v: iScience, Vol 23, Iss 2, Pp - (2020)

Summary: Inferring genome-scale metabolic networks in emerging model organisms is challenged by incomplete biochemical knowledge and partial conservation of biochemical pathways during evolution. Therefore, specific bioinformatic tools are necessary

Externí odkaz: https://doaj.org/article/80702827b9604dd680357953160424aa

Genome–Scale Metabolic Networks Shed Light on the Carotenoid Biosynthesis Pathway in the Brown Algae Saccharina japonica and Cladosiphon okamuranus

Autor: Delphine Nègre, Méziane Aite, Arnaud Belcour, Clémence Frioux, Loraine Brillet-Guéguen, Xi Liu, Philippe Bordron, Olivier Godfroy, Agnieszka P. Lipinska, Catherine Leblanc, Anne Siegel, Simon M. Dittami, Erwan Corre, Gabriel V. Markov

Publikováno v: Antioxidants, Vol 8, Iss 11, p 564 (2019)

Understanding growth mechanisms in brown algae is a current scientific and economic challenge that can benefit from the modeling of their metabolic networks. The sequencing of the genomes of Saccharina japonica and Cladosiphon okamuranus has provided

Externí odkaz: https://doaj.org/article/ad597dc6049c4e2ca0fae892a71f23b9

Changing microbial activities during low salinity acclimation in the brown alga Ectocarpus subulatus

Autor: Gianmaria Caliafano, Hetty KleinJan, Clémence Frioux, Enora Fremy, Simon M. Dittami, Anne Siegel, Méziane Aite, Catherine Boyen, Erwan Corre, Elham Karimi, Thomas Wichard

SummaryEctocarpus subulatus is one of the few brown algae found in river habitats. Its ability to tolerate freshwater is due, in part, to its uncultivated microbiome. We investigated this phenomenon by modifying the microbiome of laboratory-grown E.

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::88fa6cb084237c8ef8eacdc68d3d6cb3
https://hal.archives-ouvertes.fr/hal-03429533

Robustness analysis of metabolic predictions in algal microbial communities based on different annotation pipelines

Autor: Erwan Corre, Clémence Frioux, Elham Karimi, Méziane Aite, Anne Siegel, Simon M. Dittami, Arnaud Belcour, Enora Geslain

Publikováno v: PeerJ
PeerJ, PeerJ, 2021, 9, pp.1-24. ⟨10.7717/peerj.11344⟩
PeerJ, PeerJ, 2021, 9, pp.e11344. ⟨10.7717/peerj.11344⟩
PeerJ, 2021, 9, pp.1-24. ⟨10.7717/peerj.11344⟩
PeerJ, Vol 9, p e11344 (2021)

Animals, plants, and algae rely on symbiotic microorganisms for their development and functioning. Genome sequencing and genomic analyses of these microorganisms provide opportunities to construct metabolic networks and to analyze the metabolism of t

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f580a1dccfc24e09824d0be9b897b0b5
https://hal.sorbonne-universite.fr/hal-03223662/document

Comparative Transcriptome Analysis Provides Insights into The Response of Ulva Compressa to The Fluctuating Salinity Conditions

Autor: Qikun Xing, Guiqi Bi, Min Cao, Arnaud Belcour, Méziane Aite, Yunxiang Mao

Background: Ulva compressa, known as the green tide forming species, was reported that can adapt to hypo-salinity conditions such as estuaries and brackish lakes. To understand the underlying molecular mechanisms of hypo-salinity stress tolerance, a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::56501487532933607ca6d0bb3a3c7309
https://doi.org/10.21203/rs.3.rs-47388/v1