Výsledky vyhledávání

Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes

Autor: Nielsen, H.B., Almeida, M., Sierakowska Juncker, A., Rasmussen, S., Li, J., Sunagawa, S., Plichta, D.R., Gautier, L., Pedersen, A.G., Le Chatelier, E., Pelletier, E., Bonde, I., Nielsen, T., Manichanh, C., Arumugam, M., Batto, J.M., Quintanilha dos Santos, M.B., Blom, N., Borruel, N., Burgdorf, K.S., Boumezbeur, F., Casellas, F., Doré, J., Dworzynski, P., Guarner, F., Hansen, T., Hildebrand, F., Kaas, R.S., Kennedy, S., Kristiansen, K., Kultima, J.R., Leonard, P., Levenez, F., Lund, O., Moumen, B., Le Paslier, D., Pons, N., Pedersen, O., Prifti, E., Qin, J., Raes, J., Sørensen, S., Tap, J., Tims, S., Ussery, D.W., Yamada, T., Jamet, A., Mérieux, A., Cultrone, A., Torrejon, A., Quinquis, B., Brechot, C., Delorme, C., M'Rini, C., de Vos, W.M., Maguin, E., Varela, E., Guedon, E., Gwen, F., Haimet, F., Artiguenave, F., Vandemeulebrouck, G., Denariaz, G., Khaci, G., Blottière, H., Knol, J., Weissenbach, J., van Hylckama Vlieg, J.E., Torben, J., Parkhil, J., Turner, K., van de Guchte, M., Antolin, M., Rescigno, M., Kleerebezem, M., Derrien, M., Galleron, N., Sanchez, N., Grarup, N., Veiga, P., Oozeer, R., Dervyn, R., Layec, S., Bruls, T., Winogradski, Y., Zoetendal, E.G., Renault, D., Sicheritz-Ponten, Bork, P., Wang, J., Brunak, S., Ehrlich, S.D.

Publikováno v: Nature Biotechnology
Nature Biotechnology, Nature Publishing Group, 2014, 32, pp.822-828. ⟨10.1038/nbt.2939⟩
Nature Biotechnology, 2014, 32, pp.822-828. ⟨10.1038/nbt.2939⟩
Nature Biotechnology, Nature Publishing Group, 2014, 32 (8), pp.822-828. ⟨10.1038/nbt.2939⟩
Nature Biotechnology 32 (2014)
Nature Biotechnology, 32, 822-828
Nielsen, H B, Almeida, M, Juncker, A S, Rasmussen, S, Li, J H, Sunagawa, S, Plichta, D R, Gautier, L, Pedersen, A G, Le Chatelier, E, Pelletier, E, Bonde, I, Nielsen, T, Manichanh, C, Arumugam, M, Batto, J M, dos Santos, M B Q, Blom, N, Borruel, N, Burgdorf, K S, Boumezbeur, F, Casellas, F, Dore, J, Dworzynski, P, Guarner, F, Hansen, T, Hildebrand, F, Kaas, R S, Kennedy, S, Kristiansen, K, Kultima, J R, Leonard, P, Levenez, F, Lund, O, Moumen, B, Le Paslier, D, Pons, N, Pedersen, O, Prifti, E, Qin, J J, Raes, J, Sorensen, S, Tap, J, Tims, S, Ussery, D W, Yamada, T, Renault, P, Sicheritz-Ponten, T, Bork, P, Wang, J, Brunak, S, Ehrlich, S D & Meta, H I T C 2014, ' Identification and assembly of genomes and genetic elements in complex metagenomic samples without using reference genomes ', Nature Biotechnology, vol. 32, no. 8, pp. 822-828 . https://doi.org/10.1038/nbt.2939

Most current approaches for analyzing metagenomic data rely on comparisons to reference genomes, but the microbial diversity of many environments extends far beyond what is covered by reference databases. De novo segregation of complex metagenomic da

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::121e69b6466f2fc83a6a9b77a47c9d05
https://doi.org/10.1038/nbt.2939

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Enterotypes of the human gut microbiome

Autor: Arumugam, M., Raes, J., Pelletier, E., Le Paslier, D., Yamada, Takuji, Mende, D. R., Fernandes, G. R., Tap, J., Bruls, T., Batto, J. M., Bertalan, M., Borruel, N., Casellas, F., Fernandez, L., Gautier, L., Hansen, T., Hattori, M., Hayashi, T., Kleerebezem, M., Kurokawa, K., Leclerc, M., Levenez, F., Manichanh, C., Nielsen, H. B., Nielsen, T., Pons, N., Poulain, J., Qin, J., Sicheritz-Ponten, T., Tims, S., Torrents, D., Ugarte, E., Zoetendal, E. G., Wang, J., Guarner, F., Pedersen, O., de Vos, W. M., Brunak, S., Dor�, J., Antol匤, M., Artiguenave, F., Blottiere, H. M., Almeida, M., Brechot, C., Cara, C., Chervaux, C., Cultrone, A., Delorme, C., Denariaz, G., Dervyn, R., Foerstner, K. U., Friss, C., van de Guchte, M., Guedon, E., Haimet, F., Huber, W., van Hylckama-Vlieg, J., Jamet, A., Juste, C., Kaci, G., Knol, J., Lakhdari, O., Layec, S., Le Roux, K., Maguin, E., M駻ieux, A., Melo Minardi, R., M'rini, C., Muller, J., Oozeer, R., Parkhill, J., Renault, P., Rescigno, M., Sanchez, N., Sunagawa, S., Torrejon, A., Turner, K., Vandemeulebrouck, G., Varela, E., Winogradsky, Y., Zeller, G., Weissenbach, J., Ehrlich, S. D., Bork, P., Consortium, MetaHIT

Publikováno v: Nature
Nature, Nature Publishing Group, 2011, 473 (7346), pp.174-180. ⟨10.1038/nature09944⟩
Arumugam, M, Raes, J, Pelletier, E, Le Paslier, D, Yamada, T, Mende, D R, Fernandes, G R, Tap, J, Bruls, T, Batto, J M, Bertalan, M, Borruel, N, Casellas, F, Fernandez, L, Gautier, L, Hansen, T, Hattori, M, Hayashi, T, Kleerebezem, M, Kurokawa, K, Leclerc, M, Levenez, F, Manichanh, C, Nielsen, H B, Nielsen, T, Pons, N, Poulain, J, Qin, J J, Sicheritz-Ponten, T, Tims, S, Torrents, D, Ugarte, E, Zoetendal, E G, Wang, J, Guarner, F, Pedersen, O, de Vos, W M, Brunak, S, Dore, J, Weissenbach, J, Ehrlich, S D, Bork, P & Meta, H I T C 2011, ' Enterotypes of the human gut microbiome ', Nature, vol. 473, no. 7346, pp. 174-180 .
Nature, 2013, 473 (7346), pp.174-180. ⟨10.1038/nature09944⟩
Nature; Vol 473
Nature, 473(7346), 174-180
Nature 473 (2011) 7346

International audience; Our knowledge of species and functional composition of the human gut microbiome is rapidly increasing, but it is still based on very few cohorts and little is known about variation across the world. By combining 22 newly seque

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::a2bd3de9fbd4b76999b879eacb2b54a2
https://hal.inrae.fr/hal-03372110

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