Author Correction: Comparative and demographic analysis of orang-utan genomes

Autor: Devin P. Locke, LaDeana W. Hillier, Wesley C. Warren, Kim C. Worley, Lynne V. Nazareth, Donna M. Muzny, Shiaw-Pyng Yang, Zhengyuan Wang, Asif T. Chinwalla, Pat Minx, Makedonka Mitreva, Lisa Cook, Kim D. Delehaunty, Catrina Fronick, Heather Schmidt, Lucinda A. Fulton, Robert S. Fulton, Joanne O. Nelson, Vincent Magrini, Craig Pohl, Tina A. Graves, Chris Markovic, Andy Cree, Huyen H. Dinh, Jennifer Hume, Christie L. Kovar, Gerald R. Fowler, Gerton Lunter, Stephen Meader, Andreas Heger, Chris P. Ponting, Tomas Marques-Bonet, Can Alkan, Lin Chen, Ze Cheng, Jeffrey M. Kidd, Evan E. Eichler, Simon White, Stephen Searle, Albert J. Vilella, Yuan Chen, Paul Flicek, Jian Ma, Brian Raney, Bernard Suh, Richard Burhans, Javier Herrero, David Haussler, Rui Faria, Olga Fernando, Fleur Darré, Domènec Farré, Elodie Gazave, Meritxell Oliva, Arcadi Navarro, Roberta Roberto, Oronzo Capozzi, Nicoletta Archidiacono, Giuliano Della Valle, Stefania Purgato, Mariano Rocchi, Miriam K. Konkel, Jerilyn A. Walker, Brygg Ullmer, Mark A. Batzer, Arian F. A. Smit, Robert Hubley, Claudio Casola, Daniel R. Schrider, Matthew W. Hahn, Victor Quesada, Xose S. Puente, Gonzalo R. Ordoñez, Carlos López-Otín, Tomas Vinar, Brona Brejova, Aakrosh Ratan, Robert S. Harris, Webb Miller, Carolin Kosiol, Heather A. Lawson, Vikas Taliwal, André L. Martins, Adam Siepel, Arindam RoyChoudhury, Xin Ma, Jeremiah Degenhardt, Carlos D. Bustamante, Ryan N. Gutenkunst, Thomas Mailund, Julien Y. Dutheil, Asger Hobolth, Mikkel H. Schierup, Oliver A. Ryder, Yuko Yoshinaga, Pieter J. de Jong, George M. Weinstock, Jeffrey Rogers, Elaine R. Mardis, Richard A. Gibbs, Richard K. Wilson

Publikováno v: Nature. 608:E36-E36

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::f6d20cdb9021fd31132dd0c7200dd7b7
https://doi.org/10.1038/s41586-022-04799-7

A Massive Expansion of Effector Genes Underlies Gall-Formation in the Wheat Pest Mayetiola destructor

Autor: Brandon J. Schemerhorn, Mehwish Javaid, Kerstin P. Blankenburg, Marion O. Harris, Lora Perales, Lucio Navarro Escalante, Chaoyang Zhao, J. J. Stuart, Mustapha El-Bouhssini, Jacob Shreve, Doina Caragea, Marcus Coyle, Panagiotis Ioannidis, Subhashree Subramanyam, Martin Andersson, Kun Xue, David A. Wheeler, Ming-Shun Chen, DeNard Simmons, Christer Löfstedt, Swapnil Nagar, Geoffrey Okwuonu, Fiona Ongeri, Susan J. Brown, Nicolae Herndon, Xuming Liu, Dianhui Zhu, Richard H. Shukle, Sanjay Chellapilla, Tony Grace, George M. Weissenberger, Alisha J. Johnson, Shalini N. Jhangiani, Evgeny M. Zdobnov, Christopher B. Williams, Donna M. Muzny, Robert M. Waterhouse, Yiming Zhu, Lynne V. Nazareth, Rebecca Thornton, LaRonda Jackson, Steven E. Scherer, Cornelis J. P. Grimmelikhuijzen, Robert Mata, Liezl Francisco, Matthew Batterton, Riyue Bao, Divya Kalra, Sandra L. Lee, Markus Friedrich, Yi Han, Stephen Richards, Thiago R Benatti, Fremiet Lara, Viktoriya Korchina, John H. Werren, Navdeep Gill, Christie Kovar, Hang Chen, M. Holder, James C. Carolan, Kim C. Worley, Susanta K. Behura, Tittu Mathew, Ling Pu, Jiaxin Qu, Hugh M. Robertson, Frank Hauser, Brittany F. Peterson

Publikováno v: Current biology : CB
Current Biology, Vol. 25, No 5 (2015) pp. 613-620

SummaryGall-forming arthropods are highly specialized herbivores that, in combination with their hosts, produce extended phenotypes with unique morphologies [1]. Many are economically important, and others have improved our understanding of ecology a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::26df724cc801985c067bb49815c20e01
https://doi.org/10.1016/j.cub.2014.12.057

Mammalian Y chromosomes retain widely expressed dosage-sensitive regulators

Autor: Lynne V. Nazareth, Robert S. Fulton, Richard A. Gibbs, Wesley C. Warren, Jennifer Watt, Richard K. Wilson, Qiaoyan Wang, Donna M. Muzny, Sandy Lee, David C. Page, Steve Rozen, Ziad Khan, Jennifer F. Hughes, Jessica Alföldi, Laura G. Brown, Natalia Koutseva, Helen Skaletsky, Shannon Dugan, Colin Kremitzki, Sara Zaghlul, Donna Morton, Lora Lewis, Tina Graves, Tatyana Pyntikova, Daniel W. Bellott, Michael Holder, Yan Ding, Ting-Jan Cho, Christian J. Buhay, Susie Rock

Publikováno v: Nature

The human X and Y chromosomes evolved from an ordinary pair of autosomes, but millions of years ago genetic decay ravaged the Y chromosome, and only three per cent of its ancestral genes survived. We reconstructed the evolution of the Y chromosome ac

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c5a8ea8e239fc63fead800bbb1734b04
http://europepmc.org/articles/PMC4139287

A high-resolution map of human evolutionary constraint using 29 mammals

Autor: Kerstin, Lindblad-Toh, Manuel, Garber, Or, Zuk, Michael F, Lin, Brian J, Parker, Stefan, Washietl, Pouya, Kheradpour, Jason, Ernst, Gregory, Jordan, Evan, Mauceli, Lucas D, Ward, Craig B, Lowe, Alisha K, Holloway, Michele, Clamp, Sante, Gnerre, Jessica, Alföldi, Kathryn, Beal, Jean, Chang, Hiram, Clawson, James, Cuff, Federica, Di Palma, Stephen, Fitzgerald, Paul, Flicek, Mitchell, Guttman, Melissa J, Hubisz, David B, Jaffe, Irwin, Jungreis, W James, Kent, Dennis, Kostka, Marcia, Lara, Andre L, Martins, Tim, Massingham, Ida, Moltke, Brian J, Raney, Matthew D, Rasmussen, Jim, Robinson, Alexander, Stark, Albert J, Vilella, Jiayu, Wen, Xiaohui, Xie, Michael C, Zody, Jen, Baldwin, Toby, Bloom, Chee Whye, Chin, Dave, Heiman, Robert, Nicol, Chad, Nusbaum, Sarah, Young, Jane, Wilkinson, Kim C, Worley, Christie L, Kovar, Donna M, Muzny, Richard A, Gibbs, Andrew, Cree, Huyen H, Dihn, Gerald, Fowler, Shalili, Jhangiani, Vandita, Joshi, Sandra, Lee, Lora R, Lewis, Lynne V, Nazareth, Geoffrey, Okwuonu, Jireh, Santibanez, Wesley C, Warren, Elaine R, Mardis, George M, Weinstock, Richard K, Wilson, Kim, Delehaunty, David, Dooling, Catrina, Fronik, Lucinda, Fulton, Bob, Fulton, Tina, Graves, Patrick, Minx, Erica, Sodergren, Ewan, Birney, Elliott H, Margulies, Javier, Herrero, Eric D, Green, David, Haussler, Adam, Siepel, Nick, Goldman, Katherine S, Pollard, Jakob S, Pedersen, Eric S, Lander, Manolis, Kellis

Publikováno v: Nature
PubMed Central
Lindblad-Toh, K, Garber, M, Zuk, O, Lin, M F, Parker, B J, Washietl, S, Kheradpour, P, Ernst, J, Jordan, G, Mauceli, E, Ward, L D, Lowe, C B, Holloway, A K, Clamp, M, Gnerre, S, Alföldi, J, Beal, K, Chang, J, Clawson, H, Cuff, J, Di Palma, F, Fitzgerald, S, Flicek, P, Guttman, M, Hubisz, M J, Jaffe, D B, Jungreis, I, Kent, W J, Kostka, D, Lara, M, Martins, A L, Massingham, T, Moltke, I, Raney, B J, Rasmussen, M D, Robinson, J, Stark, A, Vilella, A J, Wen, J, Xie, X, Zody, M C, Baldwin, J, Bloom, T, Chin, C W, Heiman, D, Nicol, R, Nusbaum, C, Young, S, Wilkinson, J, Pedersen, J S & Broad Institute Sequencing Platform and Whole Genome Assembly Team 2011, ' A high-resolution map of human evolutionary constraint using 29 mammals ', Nature, vol. 478, no. 7370, pp. 476-82 . https://doi.org/10.1038/nature10530

The comparison of related genomes has emerged as a powerful lens for genome interpretation. Here we report the sequencing and comparative analysis of 29 eutherian genomes. We confirm that at least 5.5% of the human genome has undergone purifying sele

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::669061f2d8cec3d08d25af001dba00db
http://europepmc.org/articles/PMC3207357

Sequencing the Full-Length of the Phosphatase and Tensin Homolog (PTEN) Gene in Hepatocellular Carcinoma (HCC) Using the 454 GS20 and Illumina GA DNA Sequencing Platforms

Autor: Joel A. Rodriguez, Lynne V. Nazareth, Marie-Claude Gingras, Jacfranz J. Guiteau, Richard A. Gibbs, Jeffrey G. Reid, John A. Goss

Publikováno v: World Journal of Surgery. 33:647-652

Phosphatase and tensin homolog (PTEN) is a tumor-suppressor gene that is mutated in cancer of the liver, pancreas, endometrium, and prostate. PTEN-dependent pathways are involved in mediating cell growth and invasion. To sequence the whole gene (incl

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::aaea42bb9cc3bffe6d9322673cb04412
https://doi.org/10.1007/s00268-008-9852-x