Urban Wildlife Crisis: Australian Silver Gull Is a Bystander Host to Widespread Clinical Antibiotic Resistance

Autor: Ethan R. Wyrsch, Kristina Nesporova, Hassan Tarabai, Ivana Jamborova, Ibrahim Bitar, Ivan Literak, Monika Dolejska, Steven P. Djordjevic

The Australian silver gull is an urban-adapted species that frequents anthropogenic waste sites. The enterobacterial flora of synanthropic birds often carries antibiotic resistance genes. Whole-genome sequence analyses of 425 Escherichia coli isolate

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::bc0a150590eb19b5fcd319b14b706527
https://hdl.handle.net/10453/165757

Ultraconserved elements resolve phylogenetic relationships and biogeographic history of African-Malagasy bent-winged bats (Miniopterus).

Autor: Demos TC; Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA. Electronic address: tdemos@fieldmuseum.org., Webala PW; Department of Forestry and Wildlife Management, Maasai Mara University, Narok, Kenya., Goodman SM; Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA; Association Vahatra, BP 3972, Antananarivo 101, Madagascar., Kerbis Peterhans JC; Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA; College of Arts & Sciences, Roosevelt University, Chicago, IL, USA., Lutz HL; Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA; Department of Immunology and Microbiology, Scripps Research Institute, La Jolla, CA, USA., Agwanda BR; Mammalogy Section, National Museums of Kenya, Nairobi, Kenya., Cortés-Delgado N; Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA; Department of Biological Sciences, University of Illinois at Chicago, Chicago, IL, USA., Briones S; Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA; Department of Biological Sciences, University of Illinois at Chicago, Chicago, IL, USA., Ree RH; Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA., Patterson BD; Negaunee Integrative Research Center, Field Museum of Natural History, Chicago, IL, USA.

Publikováno v: Molecular phylogenetics and evolution [Mol Phylogenet Evol] 2023 Nov; Vol. 188, pp. 107890. Date of Electronic Publication: 2023 Jul 28.

Cohort-based learning for microbiome research community standards.

Autor: Kelliher JM; Los Alamos National Laboratory, Los Alamos, NM, USA. jkelliher@lanl.gov., Rudolph M; Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Vangay P; Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Abbas A; Children's Hospital of Philadelphia, Philadelphia, PA, USA., Borton MA; Colorado State University, Fort Collins, CO, USA., Davenport ER; Pennsylvania State University, State College, PA, USA., Davenport KW; Los Alamos National Laboratory, Los Alamos, NM, USA., Erazo NG; Scripps Institution of Oceanography, UC San Diego, La Jolla, CA, USA., Herman C; Northern Arizona University, Flagstaff, AZ, USA., Karstens L; Oregon Health and Science University, Portland, OR, USA., Kocurek B; Center for Veterinary Medicine, U.S. Food and Drug Administration, Laurel, MD, USA., Lutz HL; Scripps Research, La Jolla, CA, USA., Myers KS; Wisconsin Energy Institute and Great Lakes Bioenergy Research Center, University of Wisconsin-Madison, Madison, WI, USA., Ockert I; Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Rodriguez FE; Los Alamos National Laboratory, Los Alamos, NM, USA., Santistevan C; Center for Scientific Collaboration and Community Engagement, Oakland, CA, USA., Saunders JK; Woods Hole Oceanographic Institution, Falmouth, MA, USA.; University of Georgia, Athens, GA, USA., Smith ML; Pacific Northwest National Laboratory, Richland, WA, USA., Vogtmann E; National Cancer Institute, Bethesda, MD, USA., Windsor A; Center for Food Safety and Applied Nutrition, Office of Regulatory Science, U.S. Food and Drug Administration, College Park, MD, USA., Wood-Charlson EM; Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Woodley L; Center for Scientific Collaboration and Community Engagement, Oakland, CA, USA., Eloe-Fadrosh EA; Lawrence Berkeley National Laboratory, Berkeley, CA, USA. eaeloefadrosh@lbl.gov.

Publikováno v: Nature microbiology [Nat Microbiol] 2023 May; Vol. 8 (5), pp. 751-753.

Standardized multi-omics of Earth's microbiomes reveals microbial and metabolite diversity.

Autor: Shaffer JP; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Nothias LF; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Thompson LR; Northern Gulf Institute, Mississippi State University, Starkville, MS, USA.; Ocean Chemistry and Ecosystems Division, Atlantic Oceanographic and Meteorological Laboratory, National Oceanic and Atmospheric Administration, Miami, FL, USA., Sanders JG; Department of Ecology and Evolutionary Biology, Cornell University, Ithaca, NY, USA., Salido RA; Department of Bioengineering, University of California San Diego, La Jolla, CA, USA., Couvillion SP; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Brejnrod AD; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Lejzerowicz F; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Haiminen N; IBM Research, T.J. Watson Research Center, Yorktown Heights, NY, USA., Huang S; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Lutz HL; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., Zhu Q; School of Life Sciences, Arizona State University, Tempe, AZ, USA.; Biodesign Center for Fundamental and Applied Microbiomics, Arizona State University, Tempe, AZ, USA., Martino C; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA.; Bioinformatics and Systems Biology Program, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Morton JT; Center for Computational Biology, Flatiron Institute, Simons Foundation, New York, NY, USA., Karthikeyan S; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Nothias-Esposito M; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Dührkop K; Chair for Bioinformatics, Friedrich Schiller University, Jena, Germany., Böcker S; Chair for Bioinformatics, Friedrich Schiller University, Jena, Germany., Kim HW; College of Pharmacy and Integrated Research Institute for Drug Development, Dongguk University, Gyeonggi-do, Korea., Aksenov AA; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Department of Chemistry, University of Connecticut, Storrs, CT, USA., Bittremieux W; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA.; Department of Computer Science, University of Antwerp, Antwerp, Belgium., Minich JJ; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., Marotz C; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Bryant MM; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Sanders K; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Schwartz T; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Humphrey G; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Vásquez-Baeza Y; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Tripathi A; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Parida L; IBM Research, T.J. Watson Research Center, Yorktown Heights, NY, USA., Carrieri AP; IBM Research Europe, Daresbury, UK., Beck KL; IBM Research, Almaden Research Center, San Jose, CA, USA., Das P; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., González A; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., McDonald D; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Ladau J; Environmental Genomics and Systems Biology, Lawrence Berkeley National Laboratory, Berkeley, CA, USA., Karst SM; Department of Virus and Microbiological Special Diagnostics, Statens Serum Institute, Copenhagen, Denmark., Albertsen M; Department of Chemistry and Bioscience, Aalborg University, Aalborg, Denmark., Ackermann G; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., DeReus J; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA., Thomas T; Centre for Marine Science and Innovation, School of Biological, Earth and Environmental Science, The University of New South Wales, Sydney, New South Wales, Australia., Petras D; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA.; Interfaculty Institute of Microbiology and Infection Medicine, University of Tübingen, Tübingen, Baden-Württemberg, Germany., Shade A; Department of Microbiology and Molecular Genetics, Michigan State University, East Lansing, MI, USA., Stegen J; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Song SJ; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Metz TO; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Swafford AD; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA., Dorrestein PC; Collaborative Mass Spectrometry Innovation Center, University of California San Diego, La Jolla, CA, USA.; Skaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, CA, USA., Jansson JK; Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA., Gilbert JA; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA.; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA, USA., Knight R; Department of Pediatrics, School of Medicine, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu.; Department of Bioengineering, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu.; Center for Microbiome Innovation, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu.; Department of Computer Science and Engineering, Jacobs School of Engineering, University of California San Diego, La Jolla, CA, USA. robknight@ucsd.edu.

Publikováno v: Nature microbiology [Nat Microbiol] 2022 Dec; Vol. 7 (12), pp. 2128-2150. Date of Electronic Publication: 2022 Nov 28.

Conceptual strategies for characterizing interactions in microbial communities.

Autor: Kodera SM; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92037, USA., Das P; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA 92093, USA.; Department of Pediatrics, University of California San Diego, La Jolla, CA 92161, USA., Gilbert JA; Scripps Institution of Oceanography, University of California San Diego, La Jolla, CA 92037, USA.; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA 92093, USA.; Department of Pediatrics, University of California San Diego, La Jolla, CA 92161, USA., Lutz HL; Center for Microbiome Innovation, University of California San Diego, La Jolla, CA 92093, USA.; Department of Pediatrics, University of California San Diego, La Jolla, CA 92161, USA.; Negaunee Integrative Collections Center, Field Museum of Natural History, Chicago, IL 60605, USA.

Publikováno v: IScience [iScience] 2022 Jan 15; Vol. 25 (2), pp. 103775. Date of Electronic Publication: 2022 Jan 15 (Print Publication: 2022).