Zobrazeno 1 - 10
of 16
pro vyhledávání: '"Lupeng Kong"'
Autor:
Bin Huang, Lupeng Kong, Chao Wang, Fusong Ju, Qi Zhang, Jianwei Zhu, Tiansu Gong, Haicang Zhang, Chungong Yu, Wei-Mou Zheng, Dongbo Bu
Publikováno v:
Genomics, Proteomics & Bioinformatics, Vol 21, Iss 5, Pp 913-925 (2023)
Protein structure prediction is an interdisciplinary research topic that has attracted researchers from multiple fields, including biochemistry, medicine, physics, mathematics, and computer science. These researchers adopt various research paradigms
Externí odkaz:
https://doaj.org/article/b6cf23fc3363470094a5dbb6e40b4367
Publikováno v:
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-14 (2021)
Abstract Background Accurate prediction of protein tertiary structures is highly desired as the knowledge of protein structures provides invaluable insights into protein functions. We have designed two approaches to protein structure prediction, incl
Externí odkaz:
https://doaj.org/article/8ebd7756e88a456bbbc1c44d3d008136
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-9 (2021)
Protein structure prediction is a challenge. A new deep learning framework, CopulaNet, is a major step forward toward end-to-end prediction of inter-residue distances and protein tertiary structures with improved accuracy and efficiency.
Externí odkaz:
https://doaj.org/article/33cc2239e1a44129b8b0dddfeb060858
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-13 (2020)
Abstract Background The formation of contacts among protein secondary structure elements (SSEs) is an important step in protein folding as it determines topology of protein tertiary structure; hence, inferring inter-SSE contacts is crucial to protein
Externí odkaz:
https://doaj.org/article/b4a31ab8b1724892b4756a4f3d6941dd
Publikováno v:
BMC Bioinformatics, Vol 20, Iss S3, Pp 99-108 (2019)
Abstract Background The ab initio approaches to protein structure prediction usually employ the Monte Carlo technique to search the structural conformation that has the lowest energy. However, the widely-used energy functions are usually ineffective
Externí odkaz:
https://doaj.org/article/6ed28e082ad847f19e2703f86cd71abd
Publikováno v:
J Comput Biol
Template-based modeling (TBM), including homology modeling and protein threading, is one of the most reliable techniques for protein structure prediction. It predicts protein structure by building an alignment between the query sequence under predict
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c8ead283d08885815bd136b2d28a3447
https://europepmc.org/articles/PMC8892980/
https://europepmc.org/articles/PMC8892980/
Publikováno v:
BMC Bioinformatics
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-14 (2021)
BMC Bioinformatics, Vol 22, Iss 1, Pp 1-14 (2021)
Background Accurate prediction of protein tertiary structures is highly desired as the knowledge of protein structures provides invaluable insights into protein functions. We have designed two approaches to protein structure prediction, including a t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::271475d29c24b8ad2d305e3e2d37b83e
https://pubmed.ncbi.nlm.nih.gov/34525939
https://pubmed.ncbi.nlm.nih.gov/34525939
Publikováno v:
Nature Communications
Nature Communications, Vol 12, Iss 1, Pp 1-9 (2021)
Nature Communications, Vol 12, Iss 1, Pp 1-9 (2021)
Residue co-evolution has become the primary principle for estimating inter-residue distances of a protein, which are crucially important for predicting protein structure. Most existing approaches adopt an indirect strategy, i.e., inferring residue co
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e843dd76739785d150ad06b90641d354
https://pubmed.ncbi.nlm.nih.gov/33953201
https://pubmed.ncbi.nlm.nih.gov/33953201
Additional file 1: Supplementary methods, tables and figures.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8823edc65765f2a29e84959a255838e7
Autor:
S. Wang, J. L. Wang, Yunbin He, Junying Ma, Z. Sun, L. Wei, Xinzheng Zhang, Z. Liu, Dongjie Zhu, M. Wang, Lupeng Kong, L. Chen
Publikováno v:
Nature Communications, Vol 9, Iss 1, Pp 1-8 (2018)
Nature Communications
Nature Communications
Alphaviruses are enveloped RNA viruses that contain several human pathogens. Due to intrinsic heterogeneity of alphavirus particles, a high resolution structure of the virion is currently lacking. Here we provide a 3.5 Å cryo-EM structure of Sindbis
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::dc2fd6050ff51ec4e595ed3cb7d62154
https://doaj.org/article/b7ce35978c4040f9bd16bfeabee93ecf
https://doaj.org/article/b7ce35978c4040f9bd16bfeabee93ecf