Zobrazeno 1 - 10
of 18
pro vyhledávání: '"Luke E. Ulrich"'
Publikováno v:
mBio, Vol 4, Iss 4 (2013)
ABSTRACT LuxR-type transcription factors are the master regulators of quorum sensing in vibrios. LuxR proteins are unique members of the TetR superfamily of transcription factors because they activate and repress large regulons of genes. Here, we use
Externí odkaz:
https://doaj.org/article/8da5b8762d4e4a8785fb733ce26a2aea
MiST 3.0: an updated microbial signal transduction database with an emphasis on chemosensory systems
Publikováno v:
Nucleic Acids Research
Bacteria and archaea employ dedicated signal transduction systems that modulate gene expression, second-messenger turnover, quorum sensing, biofilm formation, motility, host-pathogen and beneficial interactions. The updated MiST database provides a c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8f57dd4ee7cb95e075d7348737da511f
https://resolver.caltech.edu/CaltechAUTHORS:20191125-124058503
https://resolver.caltech.edu/CaltechAUTHORS:20191125-124058503
Autor:
Iain Anderson, Luke E Ulrich, Boguslaw Lupa, Dwi Susanti, Iris Porat, Sean D Hooper, Athanasios Lykidis, Magdalena Sieprawska-Lupa, Lakshmi Dharmarajan, Eugene Goltsman, Alla Lapidus, Elizabeth Saunders, Cliff Han, Miriam Land, Susan Lucas, Biswarup Mukhopadhyay, William B Whitman, Carl Woese, James Bristow, Nikos Kyrpides
Publikováno v:
PLoS ONE, Vol 4, Iss 6, p e5797 (2009)
BACKGROUND:Methanomicrobiales is the least studied order of methanogens. While these organisms appear to be more closely related to the Methanosarcinales in ribosomal-based phylogenetic analyses, they are metabolically more similar to Class I methano
Externí odkaz:
https://doaj.org/article/630d89255bee4d5ab985f0e6c3751d9b
Autor:
Martin Wu, Qinghu Ren, A. Scott Durkin, Sean C Daugherty, Lauren M Brinkac, Robert J Dodson, Ramana Madupu, Steven A Sullivan, James F Kolonay, Daniel H Haft, William C Nelson, Luke J Tallon, Kristine M Jones, Luke E Ulrich, Juan M Gonzalez, Igor B Zhulin, Frank T Robb, Jonathan A Eisen
Publikováno v:
PLoS Genetics, Vol 2, Iss 4 (2006)
Externí odkaz:
https://doaj.org/article/683d38255c424fc7bd665d96d62b1484
Autor:
Martin Wu, Qinghu Ren, A Scott Durkin, Sean C Daugherty, Lauren M Brinkac, Robert J Dodson, Ramana Madupu, Steven A Sullivan, James F Kolonay, Daniel H Haft, William C Nelson, Luke J Tallon, Kristine M Jones, Luke E Ulrich, Juan M Gonzalez, Igor B Zhulin, Frank T Robb, Jonathan A Eisen
Publikováno v:
PLoS Genetics, Vol 1, Iss 5, p e65 (2005)
We report here the sequencing and analysis of the genome of the thermophilic bacterium Carboxydothermus hydrogenoformans Z-2901. This species is a model for studies of hydrogenogens, which are diverse bacteria and archaea that grow anaerobically util
Externí odkaz:
https://doaj.org/article/a452bdfa5c1649a6821371d34f611950
Autor:
Luke E. Ulrich, Igor B. Zhulin
Publikováno v:
Nucleic Acids Research
The MiST2 database (http://mistdb.com) identifies and catalogs the repertoire of signal transduction proteins in microbial genomes. Signal transduction systems regulate the majority of cellular activities including the metabolism, development, host-r
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b0b5140a2050ee937f03333283f0f89f
https://doi.org/10.1093/nar/gkp940
https://doi.org/10.1093/nar/gkp940
Autor:
Heiko Liesegang, Heidi J. Sofia, Sascha Dietrich, Thorsten Mascher, Luke E. Ulrich, Anna Staroń
Publikováno v:
Molecular Microbiology. 74:557-581
The ability of a bacterial cell to monitor and adaptively respond to its environment is crucial for survival. After one- and two-component systems, extracytoplasmic function (ECF) sigma factors - the largest group of alternative sigma factors - repre
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b1d682bc5400ca9d2c300b6d7ea78ed9
https://doi.org/10.1111/j.1365-2958.2009.06870.x
https://doi.org/10.1111/j.1365-2958.2009.06870.x
Autor:
Robert Belas, Mary Ann Moran, Brian J. Binder, Alexander Goesmann, Miranda Schell, F. Sun, Wenying Ye, Shulei Sun, W. Palefsky, Qinghu Ren, José M. González, Beth N. Orcutt, Linda S. Thompson, Alison Buchan, Jennifer W. Edmonds, Luke E. Ulrich, Erinn C. Howard, Christof Meile, Ian T. Paulsen, Elizabeth Saunders
Publikováno v:
Applied and Environmental Microbiology. 73:4559-4569
Bacterioplankton of the marine Roseobacter clade have genomes that reflect a dynamic environment and diverse interactions with marine plankton. Comparative genome sequence analysis of three cultured representatives suggests that cellular requirements
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::14fcf5af7a79db4f80b8c29f3a217e6f
https://doi.org/10.1128/aem.02580-06
https://doi.org/10.1128/aem.02580-06
Autor:
Luke E. Ulrich, Igor B. Zhulin
Publikováno v:
Nucleic Acids Research
Signal transduction pathways control most cellular activities in living cells ranging from regulation of gene expression to fine-tuning enzymatic activity and controlling motile behavior in response to extracellular and intracellular signals. Because
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::244cebf6a0d53e4dda1470e6b2377872
https://doi.org/10.1093/nar/gkl932
https://doi.org/10.1093/nar/gkl932
Publikováno v:
Trends in Microbiology. 13:52-56
Two-component systems that link environmental signals to cellular responses are viewed as the primary mode of signal transduction in prokaryotes. By analyz-ing information encoded by 145 prokaryotic genomes, we found that the majority of signal trans
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e713a2cf53c77b32482506a7868c87ef
https://doi.org/10.1016/j.tim.2004.12.006
https://doi.org/10.1016/j.tim.2004.12.006