Sensory Systems and Transcriptional Regulation in Escherichia coli

Autor: Georgette Femerling, Socorro Gama-Castro, Paloma Lara, Daniela Ledezma-Tejeida, Víctor H. Tierrafría, Luis Muñiz-Rascado, César Bonavides-Martínez, Julio Collado-Vides

Publikováno v: Frontiers in Bioengineering and Biotechnology, Vol 10 (2022)

In free-living bacteria, the ability to regulate gene expression is at the core of adapting and interacting with the environment. For these systems to have a logic, a signal must trigger a genetic change that helps the cell to deal with what implies

Externí odkaz: https://doaj.org/article/ff54d2615df44616840f2885e71b567b

Sensory Systems and Transcriptional Regulation in

Autor: Georgette, Femerling, Socorro, Gama-Castro, Paloma, Lara, Daniela, Ledezma-Tejeida, Víctor H, Tierrafría, Luis, Muñiz-Rascado, César, Bonavides-Martínez, Julio, Collado-Vides

Publikováno v: Frontiers in bioengineering and biotechnology. 10

In free-living bacteria, the ability to regulate gene expression is at the core of adapting and interacting with the environment. For these systems to have a logic, a signal must trigger a genetic change that helps the cell to deal with what implies

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::67e6faa954e70c42ac2ba186b7a777c1
https://pubmed.ncbi.nlm.nih.gov/35237580

RegulonDB v 10.5: tackling challenges to unify classic and high throughput knowledge of gene regulation in E. coli K-12

Autor: James E. Galagan, Cecilia Ishida-Gutiérrez, Julio Collado-Vides, Socorro Gama-Castro, Kevin Alquicira-Hernández, César Bonavides-Martínez, Jair S. García-Sotelo, Alberto Santos-Zavaleta, Heladia Salgado, Luis Muñiz-Rascado, David A. Velázquez-Ramírez, Laura Gómez-Romero, Víctor Del Moral-Chávez, Carlos-Francisco Méndez-Cruz, Mishael Sánchez-Pérez, Pablo Peña-Loredo, Daniela Ledezma-Tejeida

Publikováno v: Nucleic Acids Research

RegulonDB, first published 20 years ago, is a comprehensive electronic resource about regulation of transcription initiation of Escherichia coli K-12 with decades of knowledge from classic molecular biology experiments, and recently also from high-th

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::110e2d03ec9378fc567540767d3b1846
https://pubmed.ncbi.nlm.nih.gov/30395280

RegulonDB version 9.0: high-level integration of gene regulation, coexpression, motif clustering and beyond

Autor: Heladia Salgado, Alejandra López-Fuentes, Alejandra Medina-Rivera, Kevin Alquicira-Hernández, Jair S. García-Sotelo, Liliana Porrón-Sotelo, Lucia Pannier, Julio Collado-Vides, Socorro Gama-Castro, Luis Muñiz-Rascado, Alberto Santos-Zavaleta, Irma Martínez-Flores, Ernesto Pérez-Rueda, Jaime A. Castro-Mondragon, Shirley Alquicira-Hernández, Daniela Ledezma-Tejeida, Fabio Rinaldi, César Bonavides-Martínez, Anastasia Hernández-Koutoucheva, Víctor Del Moral-Chávez, Hilda Solano-Lira

Publikováno v: Nucleic Acids Research
Nucleic Acids Research, Oxford University Press, 2016, 44 (D1), pp.D133-D143. ⟨10.1093/nar/gkv1156⟩
Nucleic Acids Research, 2016, 44 (D1), pp.D133-D143. ⟨10.1093/nar/gkv1156⟩

International audience; RegulonDB (http://regulondb.ccg.unam.mx) is one of the most useful and important resources on bacterial gene regulation, as it integrates the scattered scientific knowledge of the best-characterized organism, Escherichia coli

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::66532f66aa8e628dbb8419ab707e4984
https://doi.org/10.1093/nar/gkv1156

RegulonDB version 7.0: transcriptional regulation of Escherichia coli K-12 integrated within genetic sensory response units (Gensor Units)

Autor: Enrique Morett, Irma Martínez-Flores, Liliana Porrón-Sotelo, Alfredo Mendoza-Vargas, Alberto Santos-Zavaleta, Verena Weiss, Blanca Taboada, Verónica Jiménez-Jacinto, Ruth Martínez-Adame, Araceli M. Huerta, Julio Collado-Vides, Hilda Solano-Lira, Leonardo Collado-Torres, Luis Muñiz-Rascado, Juan Miranda-Ríos, Heladia Salgado, Alejandra López-Fuentes, Maricela Olvera, Ricardo Grande, Kevin Alquicira-Hernández, Leticia Olvera, Leticia Vega-Alvarado, Jair S. García-Sotelo, Shirley Alquicira-Hernández, Martín Peralta-Gil, César Bonavides-Martínez, Alejandra Medina-Rivera, Socorro Gama-Castro

Publikováno v: Nucleic Acids Research

RegulonDB (http://regulondb.ccg.unam.mx/) is the primary reference database of the best-known regulatory network of any free-living organism, that of Escherichia coli K-12. The major conceptual change since 3 years ago is an expanded biological conte

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b26b8bdc1a8454ce072db6df58b8185b
https://doi.org/10.1093/nar/gkq1110