Zobrazeno 1 - 10
of 257
pro vyhledávání: '"Luis M Rodriguez"'
Autor:
Roth E. Conrad, Catherine E. Brink, Tomeu Viver, Luis M. Rodriguez-R, Borja Aldeguer-Riquelme, Janet K. Hatt, Stephanus N. Venter, Ramon Rossello-Mora, Rudolf Amann, Konstantinos T. Konstantinidis
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-12 (2024)
Abstract Recent genomic analyses have revealed that microbial communities are predominantly composed of persistent, sequence-discrete species and intraspecies units (genomovars), but the mechanisms that create and maintain these units remain unclear.
Externí odkaz:
https://doaj.org/article/030cf104af0e4c2ba257bb8ce6678299
Autor:
William B. Whitman, Maria Chuvochina, Brian P. Hedlund, Konstantinos T. Konstantinidis, Marike Palmer, Luis M. Rodriguez‐R, Iain Sutcliffe, Fengping Wang
Publikováno v:
mLife, Vol 3, Iss 1, Pp 1-13 (2024)
Abstract The SeqCode, formally called the Code of Nomenclature of Prokaryotes Described from Sequence Data, is a new code of nomenclature in which genome sequences are the nomenclatural types for the names of prokaryotic species. While similar to the
Externí odkaz:
https://doaj.org/article/1c192a1b0d29457c9e94fc3a05080c8d
Autor:
Tomeu Viver, Roth E. Conrad, Luis M. Rodriguez-R, Ana S. Ramírez, Stephanus N. Venter, Jairo Rocha-Cárdenas, Mercè Llabrés, Rudolf Amann, Konstantinos T. Konstantinidis, Ramon Rossello-Mora
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)
Abstract What a strain is and how many strains make up a natural bacterial population remain elusive concepts despite their apparent importance for assessing the role of intra-population diversity in disease emergence or response to environmental per
Externí odkaz:
https://doaj.org/article/75e59fbd38074d20977f8b248dc8e1a7
Autor:
Luis M. Rodriguez-R, Roth E. Conrad, Tomeu Viver, Dorian J. Feistel, Blake G. Lindner, Stephanus N. Venter, Luis H. Orellana, Rudolf Amann, Ramon Rossello-Mora, Konstantinos T. Konstantinidis
Publikováno v:
mBio, Vol 15, Iss 1 (2024)
ABSTRACTLarge-scale surveys of prokaryotic communities (metagenomes), as well as isolate genomes, have revealed that their diversity is predominantly organized in sequence-discrete units that may be equated to species. Specifically, genomes of the sa
Externí odkaz:
https://doaj.org/article/8dfb72290426482f9407ccf710b458a2
Autor:
Carlos Andrés Díaz Rodríguez, Laura Díaz-García, Boyke Bunk, Cathrin Spröer, Katherine Herrera, Natalia A. Tarazona, Luis M. Rodriguez-R, Jörg Overmann, Diego Javier Jiménez
Publikováno v:
ISME Communications, Vol 2, Iss 1, Pp 1-12 (2022)
Abstract The understanding and manipulation of microbial communities toward the conversion of lignocellulose and plastics are topics of interest in microbial ecology and biotechnology. In this study, the polymer-degrading capability of a minimal lign
Externí odkaz:
https://doaj.org/article/34ac8fb3a3e2489bbe8267316520c0f0
Autor:
Minjae Kim, Luis M. Rodriguez-R, Janet K. Hatt, Osman Kayali, Rassul Nalá, Anne L. Dunlop, Patricia A. Brennan, Elizabeth Corwin, Alicia K. Smith, Joe Brown, Konstantinos T. Konstantinidis
Publikováno v:
ISME Communications, Vol 2, Iss 1, Pp 1-10 (2022)
Abstract The infant gut microbiome has lifelong implications on health and immunity but there is still limited understanding of the microbiome differences and similarities between children in low- and middle-income countries (LMICs) vs. high-income c
Externí odkaz:
https://doaj.org/article/10a0abef8ebd4aa388de71c1c772d899
Autor:
Luis M. Rodriguez-R, Chirag Jain, Roth E. Conrad, Srinivas Aluru, Konstantinos T. Konstantinidis
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-7 (2021)
Externí odkaz:
https://doaj.org/article/8efd335ed6214131a12dfcf0d811a4b7
Autor:
Si-Yu Zhang, Brittany Suttner, Luis M. Rodriguez-R, Luis H. Orellana, Roth E. Conrad, Fang Liu, Jessica L. Rowell, Hattie E. Webb, Amanda J. Williams-Newkirk, Andrew Huang, Konstantinos T. Konstantinidis
Publikováno v:
mSystems, Vol 7, Iss 3 (2022)
ABSTRACT Identification of genes encoding β-lactamases (BLs) from short-read sequences remains challenging due to the high frequency of shared amino acid functional domains and motifs in proteins encoded by BL genes and related non-BL gene sequences
Externí odkaz:
https://doaj.org/article/0d8b449677384564a07b2829518fa06d
Autor:
Stefano Campanaro, Laura Treu, Luis M. Rodriguez-R, Adam Kovalovszki, Ryan M. Ziels, Irena Maus, Xinyu Zhu, Panagiotis G. Kougias, Arianna Basile, Gang Luo, Andreas Schlüter, Konstantinos T. Konstantinidis, Irini Angelidaki
Publikováno v:
Biotechnology for Biofuels, Vol 13, Iss 1, Pp 1-18 (2020)
Abstract Background Microorganisms in biogas reactors are essential for degradation of organic matter and methane production. However, a comprehensive genome-centric comparison, including relevant metadata for each sample, is still needed to identify
Externí odkaz:
https://doaj.org/article/0c7245ef47c0408080f0e37959ddb1b2
Autor:
Kenji Gerhardt, Carlos A. Ruiz-Perez, Luis M. Rodriguez-R, Roth E. Conrad, Konstantinos T. Konstantinidis
Publikováno v:
Frontiers in Bioinformatics, Vol 1 (2022)
Mapping of short metagenomic (or metatranscriptomic) read data to reference isolate or single-cell genomes or metagenome-assembled genomes (MAGs) to assess microbial population relative abundance and/or structure represents an essential task of many
Externí odkaz:
https://doaj.org/article/abb2c3274fde4fd48f6cdbcee5d2a028