Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

Autor: Stephen J. Bush, Lucy Freem, Amanda J. MacCallum, Jenny O’Dell, Chunlei Wu, Cyrus Afrasiabi, Androniki Psifidi, Mark P. Stevens, Jacqueline Smith, Kim M. Summers, David A. Hume

Publikováno v: BMC Genomics, Vol 19, Iss 1, Pp 1-19 (2018)

Abstract Background The domestic chicken (Gallus gallus) is widely used as a model in developmental biology and is also an important livestock species. We describe a novel approach to data integration to generate an mRNA expression atlas for the chic

Externí odkaz: https://doaj.org/article/37c7943d6af743708adf60de70a96b41

Feather arrays are patterned by interacting signalling and cell density waves.

Autor: William K W Ho, Lucy Freem, Debiao Zhao, Kevin J Painter, Thomas E Woolley, Eamonn A Gaffney, Michael J McGrew, Athanasia Tzika, Michel C Milinkovitch, Pascal Schneider, Armin Drusko, Franziska Matthäus, James D Glover, Kirsty L Wells, Jeanette A Johansson, Megan G Davey, Helen M Sang, Michael Clinton, Denis J Headon

Publikováno v: PLoS Biology, Vol 17, Iss 2, p e3000132 (2019)

Feathers are arranged in a precise pattern in avian skin. They first arise during development in a row along the dorsal midline, with rows of new feather buds added sequentially in a spreading wave. We show that the patterning of feathers relies on c

Externí odkaz: https://doaj.org/article/eaeacd7112b1485b9555e43fb7a6f86d

Characterization of Subpopulations of Chicken Mononuclear Phagocytes That Express TIM4 and CSF1R

Autor: Kim M. Summers, Lucy Freem, Lonneke Vervelde, Adam Balic, David A. Hume, Tuanjun Hu, Stephen J. Bush, Peter K. Kaiser, Zhiguang Wu

Publikováno v: The Journal of Immunology. 202:1186-1199

The phosphatidylserine receptor TIM4, encoded by TIMD4, mediates the phagocytic uptake of apoptotic cells. We applied anti-chicken TIM4 mAbs in combination with CSF1R reporter transgenes to dissect the function of TIM4 in the chick (Gallus gallus). D

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::60b8c71950302c9f352134a82f1f692e
https://doi.org/10.4049/jimmunol.1800504

Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken

Autor: David A. Hume, Stephen J. Bush, Jacqueline Smith, Lucy Freem, Jenny O’Dell, Chunlei Wu, Androniki Psifidi, Mark P. Stevens, Kim M. Summers, Cyrus Afrasiabi, Amanda MacCallum

Publikováno v: Bush, S J, Freem, L, MacCallum, A J, O'Dell, J, Wu, C, Afrasiabi, C, Psifidi, A, Stevens, M P, Smith, J, Summers, K M & Hume, D A 2018, ' Combination of novel and public RNA-seq datasets to generate an mRNA expression atlas for the domestic chicken ', BMC Genomics, vol. 19, no. 1, 594 (2018) . https://doi.org/10.1186/s12864-018-4972-7
BMC Genomics
BMC Genomics, Vol 19, Iss 1, Pp 1-19 (2018)

BackgroundThe domestic chicken (Gallus gallus) is widely used as a model in developmental biology and is also an important livestock species. We describe a novel approach to data integration to generate an mRNA expression atlas for the chicken spanni

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e5e1dc6cd5d8cef6f56c6ef038dc7529
http://ora.ox.ac.uk/objects/uuid:

Neural Regulation of Lung Development

Autor: Alan J. Burns, Jean-Marie Delalande, Lucy Freem

Publikováno v: Stem Cells in the Lung ISBN: 9783319210810

The respiratory system, comprising the lungs, trachea, vasculature, and associated neural tissues, carries out gas exchange essential for terrestrial life. During early embryonic development, the lung primordium, originating from the ventral foregut

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::3e24fe7504f7a945fb246239d8e680d2
https://doi.org/10.1007/978-3-319-21082-7_4