SPINDLY mediates O-fucosylation of hundreds of proteins and sugar-dependent growth in Arabidopsis.

Autor: Bi Y; Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA., Shrestha R; Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA., Zhang Z; Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA., Hsu CC; Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA.; Institute of Plant and Microbial Biology, Academia Sinica, Taipei 115, Taiwan., Reyes AV; Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA.; Carnegie Mass Spectrometry Facility, Carnegie Institution for Science, Stanford, California 94305, USA., Karunadasa S; Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA., Baker PR; Department of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, California 94143, USA., Maynard JC; Department of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, California 94143, USA., Liu Y; ThermoFisher Scientific, San Jose, California 95134, USA., Hakimi A; ThermoFisher Scientific, San Jose, California 95134, USA., Lopez-Ferrer D; ThermoFisher Scientific, San Jose, California 95134, USA., Hassan T; ThermoFisher Scientific, Somerset, New Jersey 08873, USA., Chalkley RJ; Department of Pharmaceutical Chemistry, University of California at San Francisco, San Francisco, California 94143, USA., Xu SL; Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA.; Carnegie Mass Spectrometry Facility, Carnegie Institution for Science, Stanford, California 94305, USA., Wang ZY; Department of Plant Biology, Carnegie Institution for Science, Stanford, California 94305, USA.

Publikováno v: The Plant cell [Plant Cell] 2023 Apr 20; Vol. 35 (5), pp. 1318-1333.

Charge-based interactions through peptide position 4 drive diversity of antigen presentation by human leukocyte antigen class I molecules.

Autor: Jackson KR; University of Texas MD Anderson Cancer Center, UTHealth Graduate School of Biomedical Sciences, Houston, TX, USA., Antunes DA; Department of Biology and Biochemistry, University of Houston, Houston, TX, USA., Talukder AH; Department of Melanoma, UT MD Anderson Cancer Center, Houston, TX, USA., Maleki AR; Department of Melanoma, UT MD Anderson Cancer Center, Houston, TX, USA., Amagai K; Department of Melanoma, UT MD Anderson Cancer Center, Houston, TX, USA., Salmon A; University of Texas MD Anderson Cancer Center, UTHealth Graduate School of Biomedical Sciences, Houston, TX, USA., Katailiha AS; Department of Melanoma, UT MD Anderson Cancer Center, Houston, TX, USA., Chiu Y; Department of Melanoma, UT MD Anderson Cancer Center, Houston, TX, USA., Fasoulis R; Department of Computer Science, Rice University, Houston, TX, USA., Rigo MM; Department of Computer Science, Rice University, Houston, TX, USA., Abella JR; Department of Computer Science, Rice University, Houston, TX, USA., Melendez BD; University of Texas MD Anderson Cancer Center, UTHealth Graduate School of Biomedical Sciences, Houston, TX, USA., Li F; Department of Melanoma, UT MD Anderson Cancer Center, Houston, TX, USA., Sun Y; University of Texas MD Anderson Cancer Center, UTHealth Graduate School of Biomedical Sciences, Houston, TX, USA., Sonnemann HM; University of Texas MD Anderson Cancer Center, UTHealth Graduate School of Biomedical Sciences, Houston, TX, USA., Belousov V; BostonGene Corporation, Waltham, MA, USA., Frenkel F; BostonGene Corporation, Waltham, MA, USA., Justesen S; Immunitrack Aps, Copenhagen, Denmark., Makaju A; ThermoFisher Scientific, San Jose, CA, USA., Liu Y; ThermoFisher Scientific, San Jose, CA, USA., Horn D; ThermoFisher Scientific, San Jose, CA, USA., Lopez-Ferrer D; ThermoFisher Scientific, San Jose, CA, USA., Huhmer AF; ThermoFisher Scientific, San Jose, CA, USA., Hwu P; Department of Melanoma, UT MD Anderson Cancer Center, Houston, TX, USA., Roszik J; Department of Melanoma, UT MD Anderson Cancer Center, Houston, TX, USA., Hawke D; Department of Systems Biology, UT MD Anderson Cancer Center, Houston, TX, USA., Kavraki LE; Department of Computer Science, Rice University, Houston, TX, USA., Lizée G; Department of Melanoma, UT MD Anderson Cancer Center, Houston, TX, USA.

Publikováno v: PNAS nexus [PNAS Nexus] 2022 Jul 27; Vol. 1 (3), pp. pgac124. Date of Electronic Publication: 2022 Jul 27 (Print Publication: 2022).

Real-Time Search-Assisted Acquisition on a Tribrid Mass Spectrometer Improves Coverage in Multiplexed Single-Cell Proteomics.

Autor: Furtwängler B; The Finsen Laboratory, Rigshospitalet, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark; Biotech Research and Innovation Centre (BRIC), University of Copenhagen, Copenhagen, Denmark; Novo Nordisk Foundation Center for Stem Cell Biology, DanStem, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark. Electronic address: benjamin.furtwangler@bric.ku.dk., Üresin N; The Finsen Laboratory, Rigshospitalet, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark; Biotech Research and Innovation Centre (BRIC), University of Copenhagen, Copenhagen, Denmark., Motamedchaboki K; ThermoFisher Scientific, San Jose, California, USA., Huguet R; ThermoFisher Scientific, San Jose, California, USA., Lopez-Ferrer D; ThermoFisher Scientific, San Jose, California, USA., Zabrouskov V; ThermoFisher Scientific, San Jose, California, USA., Porse BT; The Finsen Laboratory, Rigshospitalet, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark; Biotech Research and Innovation Centre (BRIC), University of Copenhagen, Copenhagen, Denmark; Novo Nordisk Foundation Center for Stem Cell Biology, DanStem, Faculty of Health Sciences, University of Copenhagen, Copenhagen, Denmark., Schoof EM; Department of Biotechnology and Biomedicine, Technical University of Denmark, Lyngby, Denmark. Electronic address: erws@dtu.dk.

Publikováno v: Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2022 Apr; Vol. 21 (4), pp. 100219. Date of Electronic Publication: 2022 Feb 25.

High-Density, Targeted Monitoring of Tyrosine Phosphorylation Reveals Activated Signaling Networks in Human Tumors.

Autor: Stopfer LE; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts.; Center for Precision Cancer Medicine, Massachusetts Institute of Technology, Cambridge, Massachusetts.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts., Flower CT; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts.; Center for Precision Cancer Medicine, Massachusetts Institute of Technology, Cambridge, Massachusetts.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts.; Program in Computational and Systems Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts., Gajadhar AS; Thermo Fisher Scientific, San Jose, California., Patel B; Thermo Fisher Scientific, Rockford, Illinois., Gallien S; Thermo Fisher Scientific, Precision Medicine Science Center, Cambridge, Massachusetts., Lopez-Ferrer D; Thermo Fisher Scientific, San Jose, California., White FM; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, Massachusetts. fwhite@mit.edu.; Center for Precision Cancer Medicine, Massachusetts Institute of Technology, Cambridge, Massachusetts.; Department of Biological Engineering, Massachusetts Institute of Technology, Cambridge, Massachusetts.; Program in Computational and Systems Biology, Massachusetts Institute of Technology, Cambridge, Massachusetts.

Publikováno v: Cancer research [Cancer Res] 2021 May 01; Vol. 81 (9), pp. 2495-2509. Date of Electronic Publication: 2021 Jan 28.

A Study of the Community Relationships Between Methanotrophs and Their Satellites Using Constraint-Based Modeling Approach.

Autor: Esembaeva, Maryam A.¹ (AUTHOR) maryashaesembaeva@gmail.com, Kulyashov, Mikhail A.¹ (AUTHOR), Kolpakov, Fedor A.¹ (AUTHOR), Akberdin, Ilya R.¹ (AUTHOR) akberdin.ir@talantiuspeh.ru

Publikováno v: International Journal of Molecular Sciences. Nov2024, Vol. 25 Issue 22, p12469. 17p.