The Gene Ontology in 2010: extensions and refinements

Autor: Berardini, Tz, Li, D, Huala, E, Bridges, S, Burgess, S, Mccarthy, F, Carbon, S, Lewis, Se, Mungall, Cj, Abdulla, A, Wood, V, Feltrin, E, Valle, Giorgio, Chisholm, Rl, Fey, P, Gaudet, P, Kibbe, W, Basu, S, Bushmanova, Y, Eilbeck, K, Siegele, Da, Mcintosh, B, Renfro, D, Zweifel, A, Hu, Jc, Ashburner, M, Tweedie, S, ALAM FARUQUE, Y, Apweiler, R, Auchinchloss, A, Bairoch, A, Barrell, D, Binns, D, Blatter, Mc, Bougueleret, L, Boutet, E, Breuza, L, Bridge, A, Browne, P, Chan, Wm, Coudert, E, Daugherty, L, Dimmer, E, Eberhardt, R, Estreicher, A, Famiglietti, L, FERRO ROJAS, S, Feuermann, M, Foulger, R, GRUAZ GUMOWSKI, N, Hinz, U, Huntley, R, Jimenez, S, Jungo, F, Keller, G, Laiho, K, Legge, D, Lemercier, P, Lieberherr, D, Magrane, M, O'Donovan, C, Pedruzzi, I, Poux, S, Rivoire, C, Roechert, B, Sawford, T, Schneider, M, Stanley, E, Stutz, A, Sundaram, S, Tognolli, M, Xenarios, I, Harris, Ma, Deegan, Ji, Ireland, A, Lomax, J, Jaiswal, P, Chibucos, M, Giglio, Mg, Wortman, J, Hannick, L, Madupu, R, Botstein, D, Dolinski, K, Livstone, Ms, Oughtred, R, Blake, Ja, Bult, C, Diehl, Ad, Dolan, M, Drabkin, H, Eppig, Jt, Hill, Dp, Ni, L, Ringwald, M, Sitnikov, D, Collmer, C, TORTO ALALIBO, T, Laulederkind, S, Shimoyama, M, Twigger, S, D'Eustachio, P, Matthews, L, Balakrishnan, R, Binkley, G, Cherry, Jm, Christie, Kr, Costanzo, Mc, Engel, Sr, Fisk, Dg, Hirschman, Je, Hitz, Bc, Hong, El, Krieger, Cj, Miyasato, Sr, Nash, Rs, Park, J, Skrzypek, Ms, Weng, S, Wong, Ed, Aslett, M, Chan, J, Kishore, R, Sternberg, P, VAN AUKE, K, Khodiyar, Vk, Lovering, Rc, Talmud, Pj, Howe, D, Westerfield, M.

Publikováno v: Nucleic Acids Research, vol. 38, no. Database issue, pp. D331-D335
Nucleic Acids Research

The Gene Ontology (GO) Consortium (http://www.geneontology.org) (GOC) continues to develop, maintain and use a set of structured, controlled vocabularies for the annotation of genes, gene products and sequences. The GO ontologies are expanding both i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2e4f228dee6f491f716236b54d7dbb31
https://serval.unil.ch/resource/serval:BIB_C3C5174BCA6C.P001/REF.pdf

The Gene Ontology: enhancements for 2011

Autor: P D'Eustachio, Benjamin C. Hitz, Julie Park, Paul Browne, Douglas G. Howe, Cynthia J. Krieger, Kalpana Karra, Stan Laulederkind, Karen R. Christie, Susan Tweedie, Eurie L. Hong, Lydie Bougueleret, Michele Magrane, Cathy R. Gresham, Rolf Apweiler, Lisa Matthews, Dong Li, Philippa J. Talmud, Ioannis Xenarios, J. M. Cherry, Tanya Z. Berardini, Deborah A. Siegele, Rama Balakrishnan, D. Sitnikov, A. Auchinchloss, Selina S. Dwight, Tony Sawford, Paul J. Kersey, Ruth C. Lovering, Ruth Y. Eberhardt, Ursula Hinz, Lakshmi Pillai, Sylvain Poux, Edith D. Wong, Klemens Pichler, Kati Laiho, Malcolm J. Gardner, Stephen G. Oliver, Lionel Breuza, Kara Dolinski, P Lemercier, Kristian B. Axelsen, Midori A. Harris, Adrienne E. Zweifel, H. Drabkin, Guillaume Keller, Marek S. Skrzypek, Daniel M. Staines, Fiona M. McCarthy, Nicholas H. Brown, Mark D. McDowall, Antonia Lock, Mary Shimoyama, Maria C. Costanzo, Teresia Buza, S. Jimenez, Rex L. Chisholm, Paul W. Sternberg, Hui Wang, Nadine Gruaz-Gumowski, Chantal Hulo, Rebecca E. Foulger, Melinda R. Dwinell, Judith A. Blake, Marcus C. Chibucos, B. K. McIntosh, C. D. Amundsen, Jane Lomax, L Famiglietti, Tom Hayman, Michael Tognolli, Eva Huala, James C. Hu, Patrick Masson, Maria Jesus Martin, Benoit Bely, Shuai Weng, Heather C. Wick, E. Dimmer, L. Ni, Catherine Rivoire, Christopher J. Mungall, H. Sehra, P. Duek-Roggli, Maria Victoria Schneider, Dianna G. Fisk, Michael S. Livstone, Ivo Pedruzzi, Shyamala Sundaram, Donna K. Slonim, Isabelle Cusin, Stuart R. Miyasato, Timothy F. Lowry, Varsha K. Khodiyar, Seth Carbon, Elisabeth Coudert, Jürg Bähler, Juancarlos Chan, Evelyn Camon, Daniel P. Renfro, Anne Estreicher, M. C. Blatter, Robert S. Nash, P Gaudet, Sven Heinicke, K. Van Auken, Stacia R. Engel, Alan Bridge, Ralf Stephan, Mary E. Dolan, Shane C. Burgess, Petra Fey, Shur-Jen Wang, Damien Lieberherr, Duncan Legge, P. Porras Millán, Andre Stutz, Yasmin Alam-Faruque, Gail Binkley, Bernd Roechert, S. Branconi-Quintaje, Ghislaine Argoud-Puy, S. Basu, Kim Rutherford, M. Moinat, Monte Westerfield, Arnaud Gos, Eleanor J Stanley, Valerie Wood, Ranjana Kishore, Diego Poggioli, S. Ferro-Rojas, Victoria Petri, Florence Jungo, Suzanna E. Lewis, Emmanuel Boutet, Warren A. Kibbe, M Feuermann, Claire O'Donovan, W. M. Chan, J. James, David P. Hill, Rachael P. Huntley, M. Gwinn Giglio, Paul Thomas, Jodi E. Hirschman, Paola Roncaglia

Publikováno v: Nucleic Acids Research
Nucleic Acids Research, vol. 40, no. Database issue, pp. D559-D564

The Gene Ontology (GO) (http://www.geneontology.org) is a community bioinformatics resource that represents gene product function through the use of structured, controlled vocabularies. The number of GO annotations of gene products has increased due

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5585f546fdf0ce700258904074512169
https://doi.org/10.1093/nar/gkr1028

BioGRID: A Resource for Studying Biological Interactions in Yeast.

Autor: Oughtred R; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Chatr-aryamontri A; Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec H3C 3J7, Canada;, Breitkreutz BJ; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Chang CS; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Rust JM; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Theesfeld CL; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Heinicke S; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Breitkreutz A; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Chen D; Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec H3C 3J7, Canada;, Hirschman J; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Kolas N; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Livstone MS; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Nixon J; School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, United Kingdom., O'Donnell L; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Ramage L; School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, United Kingdom., Winter A; School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, United Kingdom., Reguly T; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Sellam A; Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec H3C 3J7, Canada;, Stark C; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Boucher L; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada;, Dolinski K; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey 08544;, Tyers M; Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Québec H3C 3J7, Canada; Samuel Lunenfeld Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada; School of Biological Sciences, University of Edinburgh, Edinburgh, EH9 3JR, United Kingdom.

Publikováno v: Cold Spring Harbor protocols [Cold Spring Harb Protoc] 2016 Jan 04; Vol. 2016 (1), pp. pdb.top080754. Date of Electronic Publication: 2016 Jan 04.

The BioGRID interaction database: 2015 update.

Autor: Chatr-Aryamontri A; Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Quebec H3C 3J7, Canada., Breitkreutz BJ; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada., Oughtred R; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA., Boucher L; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada., Heinicke S; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA., Chen D; Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Quebec H3C 3J7, Canada., Stark C; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada., Breitkreutz A; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada., Kolas N; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada., O'Donnell L; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada., Reguly T; The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada., Nixon J; School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, UK., Ramage L; School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, UK., Winter A; School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, UK., Sellam A; Centre Hospitalier de l'Université Laval (CHUL), Québec, Québec G1V 4G2, Canada., Chang C; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA., Hirschman J; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA., Theesfeld C; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA., Rust J; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA., Livstone MS; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA., Dolinski K; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, NJ 08544, USA., Tyers M; Institute for Research in Immunology and Cancer, Université de Montréal, Montréal, Quebec H3C 3J7, Canada The Lunenfeld-Tanenbaum Research Institute, Mount Sinai Hospital, Toronto, Ontario M5G 1X5, Canada School of Biological Sciences, University of Edinburgh, Edinburgh EH9 3JR, UK md.tyers@umontreal.ca.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2015 Jan; Vol. 43 (Database issue), pp. D470-8. Date of Electronic Publication: 2014 Nov 26.

Inferring protein function from homology using the Princeton Protein Orthology Database (P-POD).

Autor: Livstone MS; Lewis-Sigler Institute for Integrative Genomics, Princeton University, Princeton, New Jersey, USA., Oughtred R, Heinicke S, Vernot B, Huttenhower C, Durand D, Dolinski K

Publikováno v: Current protocols in bioinformatics [Curr Protoc Bioinformatics] 2011 Mar; Vol. Chapter 6, pp. Unit 6.11.