Zobrazeno 1 - 10
of 42
pro vyhledávání: '"Linda Cardle"'
Autor:
Hui Liu, Jim McNicol, Micha Bayer, Jenny A. Morris, Linda Cardle, David F. Marshall, Daniela Schulte, Nils Stein, Bu-Jun Shi, Stefan Taudien, Robbie Waugh, Peter E. Hedley
Publikováno v:
BioTechniques, Vol 50, Iss 3, Pp 165-174 (2011)
Second-generation sequencing now provides the potential for low-cost generation of whole-genome sequences. However, for large-genome organisms with high repetitive DNA content, genome-wide short read sequence assembly is currently impossible, with ac
Externí odkaz:
https://doaj.org/article/ab876c1076194a71a3fcee4526249769
Autor:
Joanne R Russell, Peter E Hedley, Linda Cardle, Siobhan Dancey, Jenny Morris, Allan Booth, David Odee, Lucy Mwaura, William Omondi, Peter Angaine, Joseph Machua, Alice Muchugi, Iain Milne, Roeland Kindt, Ramni Jamnadass, Ian K Dawson
Publikováno v:
PLoS ONE, Vol 9, Iss 7, p e102502 (2014)
The development of genetic tools for non-model organisms has been hampered by cost, but advances in next-generation sequencing (NGS) have created new opportunities. In ecological research, this raises the prospect for developing molecular markers to
Externí odkaz:
https://doaj.org/article/4a6dd7a649814d01a567abb63a899f7a
Autor:
Xinwei Chen, Christine A Hackett, Rients E Niks, Peter E Hedley, Clare Booth, Arnis Druka, Thierry C Marcel, Anton Vels, Micha Bayer, Iain Milne, Jenny Morris, Luke Ramsay, David Marshall, Linda Cardle, Robbie Waugh
Publikováno v:
PLoS ONE, Vol 5, Iss 1, p e8598 (2010)
BackgroundGenetic resistance to barley leaf rust caused by Puccinia hordei involves both R genes and quantitative trait loci. The R genes provide higher but less durable resistance than the quantitative trait loci. Consequently, exploring quantitativ
Externí odkaz:
https://doaj.org/article/aeaba95af252498a97e03454944c967e
Autor:
Linda Cardle, Kamil Witek, Dan MacLean, Leighton Pritchard, Peter J. A. Cock, Ingo Hein, Richard M. Leggett, Florian Jupe, Jadwiga Śliwka, Glenn J. Bryan, Jonathan D. G. Jones, Walter Verweij, Graham J Etherington
Publikováno v:
The Plant Journal
Summary RenSeq is a NB-LRR (nucleotide binding-site leucine-rich repeat) gene-targeted, Resistance gene enrichment and sequencing method that enables discovery and annotation of pathogen resistance gene family members in plant genome sequences. We su
Publikováno v:
Plant Bioinformatics ISBN: 9781493931668
This chapter is designed to be a practical guide to using Tablet for the visualization of next/second-generation (NGS) sequencing data. NGS data is being produced more frequently and in greater data volumes every year. As such, it is increasingly imp
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::77c098f7b9719d37cde6f5a595ec53c2
https://doi.org/10.1007/978-1-4939-3167-5_14
https://doi.org/10.1007/978-1-4939-3167-5_14
Autor:
Linda Cardle, Leighton Pritchard, Iain Milne, Micha Bayer, Peter J. A. Cock, Paul Shaw, Gordon Stephen, A. David Marshall
Publikováno v:
Briefings in Bioinformatics. 14:193-202
The advent of second-generation sequencing (2GS) has provided a range of significant new challenges for the visualization of sequence assemblies. These include the large volume of data being generated, short-read lengths and different data types and
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 1374
This chapter is designed to be a practical guide to using Tablet for the visualization of next/second-generation (NGS) sequencing data. NGS data is being produced more frequently and in greater data volumes every year. As such, it is increasingly imp
Autor:
Yamile Marquez, Craig G. Simpson, Jacqueline Marshall, Branislav Kusenda, Naeem H. Syed, Dominika Lewandowska, James W. McNicol, John Fuller, Maria Kalyna, Andrea Barta, John W. S. Brown, Linda Cardle, Huy Q. Dinh
Publikováno v:
Nucleic Acids Research
Alternative splicing (AS) coupled to nonsense-mediated decay (NMD) is a post-transcriptional mechanism for regulating gene expression. We have used a high-resolution AS RT–PCR panel to identify endogenous AS isoforms which increase in abundance whe
Autor:
David Marshall, Linda Cardle, Daniela Schulte, Nils Stein, Stefan Taudien, Hui Liu, Bu-Jun Shi, Jenny Morris, Pete E. Hedley, Micha Bayer, Robbie Waugh, James W. McNicol
Publikováno v:
BioTechniques. 50:165-174
Second-generation sequencing now provides the potential for low-cost generation of whole-genome sequences. However, for large-genome organisms with high repetitive DNA content, genome-wide short read sequence assembly is currently impossible, with ac
Autor:
Robbie Waugh, Jill Alexander, David Marshall, Arnis Druka, Ilze Druka, Vera Vendramin, Jerome D. Franckowiak, Luke Ramsay, Slobodanka Radovic, Udda Lundqvist, David Harrap, Linda Cardle, Michele Morgante, Justyna Guzy-Wrobelska, Fahimeh Shahinnia, Malcolm Macaulay, Nicola Bonar, Kelly Houston, Iain Grant, Nils Stein
Publikováno v:
Biochemical Society Transactions. 38:683-688
The identification of genes underlying complex quantitative traits such as grain yield by means of conventional genetic analysis (positional cloning) requires the development of several large mapping populations. However, it is possible that phenotyp