Zobrazeno 1 - 10
of 52
pro vyhledávání: '"Lien, Tonje G."'
Publikováno v:
Scientific Reports 6, Article number: 35985 (2016)
Combining genome-wide structural models with phenomenological data is at the forefront of efforts to understand the organizational principles regulating the human genome. Here, we use chromosome-chromosome contact data as knowledge-based constraints
Externí odkaz:
http://arxiv.org/abs/1610.05315
Autor:
van de Wiel, Mark A., Lien, Tonje G., Verlaat, Wina, van Wieringen, Wessel N., Wilting, Saskia M.
For many high-dimensional studies, additional information on the variables, like (genomic) annotation or external p-values, is available. In the context of binary and continuous prediction, we develop a method for adaptive group-regularized (logistic
Externí odkaz:
http://arxiv.org/abs/1411.3496
Autor:
Lingjærde, Camilla1 (AUTHOR) camilla.lingjaerde@mrc-bsu.cam.ac.uk, Lien, Tonje G.2 (AUTHOR), Borgan, Ørnulf3 (AUTHOR), Bergholtz, Helga2 (AUTHOR), Glad, Ingrid K.3 (AUTHOR)
Publikováno v:
BMC Bioinformatics. 10/15/2021, Vol. 22 Issue 1, p1-22. 22p.
Akademický článek
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Akademický článek
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Additional file 3. Comparison of histograms of the non-zero prior partial correlation weights for the simulated data and the real multiomic data. The histograms show how the distribution of the prior weights in our simulations resemble the distributi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::40e099a9f9830ee36c654a6c498dc334
Additional file 5. The tailored graphical lasso graph for the Oslo 2 RPPA data. The graph found in the analysis of the Oslo 2 data we did in this paper, using the mRNA data as prior information.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::abdec5fd8dbb22ede702397639e219e6
Additional file 2. Table of performance in extended simulation study. The performance of the different graph reconstruction methods in the extended simulation study. The edge disagreement between the graph of interest and its prior, as well as the si
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2be9ed3111f3bf3b0742e2961c8cf8ac
Additional file 4. The tailored graphical lasso graph for the TCGA BRCA RPPA data. The graph found in the analysis of the TCGA BRCA data we did in this paper, using the RNA-seq data as prior information.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4ee419b83df4ee6b884e0048becb8569
Additional file 1. Details on extended simulation study. A description of the extended simulation study, where more methods are included, as well as a discussion of the results.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::63395730d2007f91314a5d34daedd07f