Zobrazeno 1 - 10
of 62
pro vyhledávání: '"Li-Zhen Sun"'
Autor:
Jun-Lin Qian, Li-Zhen Sun
Publikováno v:
Data in Brief, Vol 42, Iss , Pp 108284- (2022)
The utility of the coarse-grained (CG) single-stranded DNA (ssDNA) model can drastically reduce the compute time for simulating the ssDNA dynamics. The model-matched CG potentials and the inherent potential constants can be derived by coarse-graining
Externí odkaz:
https://doaj.org/article/66d1b5c17f884efd8c267a2a68098c7b
Publikováno v:
ACS Omega, Vol 4, Iss 13, Pp 15407-15413 (2019)
Externí odkaz:
https://doaj.org/article/b3182f28d0ae4897b65c5cef11816731
Publikováno v:
ACS Omega, Vol 4, Iss 8, Pp 13435-13446 (2019)
Externí odkaz:
https://doaj.org/article/134bdcff7a7641509cfa2bdf00807327
Publikováno v:
Frontiers in Molecular Biosciences, Vol 4 (2017)
The long-range base pairing between the 5BSL3. 2 and 3′X domains in hepatitis C virus (HCV) genomic RNA is essential for viral replication. Experimental evidence points to the critical role of metal ions, especially Mg2+ ions, in the formation of t
Externí odkaz:
https://doaj.org/article/1199a6ed79ca4158b48fb98a06389f05
Publikováno v:
Entropy, Vol 21, Iss 3, p 227 (2019)
The emergence of random eigenstates of quantum many-body systems in integrable-chaos transitions is the underlying mechanism of thermalization for these quantum systems. We use fidelity and modulus fidelity to measure the randomness of eigenstates in
Externí odkaz:
https://doaj.org/article/4c7b52514acc4767a701d3e5f1aab098
Publikováno v:
Acta Crystallographica Section E, Vol 66, Iss 3, Pp m301-m301 (2010)
The title compound, [Fe(C5H5)(C18H32N)], was synthesized by the amination of ferrocenecarbaldehyde. In the complex, the two cyclopentadienyl (Cp) rings are almost parallel with a dihedral angle of 1.36 (8)°, and are separated by a centroid–centroi
Externí odkaz:
https://doaj.org/article/c71281a73d854f19908144cd15a0eb36
Publikováno v:
Physical Chemistry Chemical Physics. 24:20867-20881
Based on the Langevin dynamics simulations of the ssDNA-Na+/Mg2+ systems, we reported the quantitative dependence of both the binding fractions of the excess ions and radii of gyration of ssDNA on ion concentrations.
Publikováno v:
J Chem Theory Comput
The ability to accurately predict the binding site, binding pose, and binding affinity for ligand-RNA binding is important for RNA-targeted drug design. Here, we describe a new computational method, RLDOCK, for predicting the binding site and binding
Publikováno v:
Biophys J
RNA functions are often kinetically controlled. The folding kinetics of RNAs involves global structural changes and local nucleotide movement, such as base flipping. The most elementary step in RNA folding is the closing and opening of a basepair. By
Publikováno v:
Physical chemistry chemical physics : PCCP. 23(37)
The Y-family DNA polymerases specialize in translesion DNA synthesis, which is essential for replicating damaged DNA. The Y-family polymerases, which are made up of four stable domains, exhibit extensive distributions of charged residues, and are res