Zobrazeno 1 - 10
of 45
pro vyhledávání: '"Levy-Moonshine A"'
Autor:
Wood Derrick E, Lin Henry, Levy-Moonshine Ami, Swaminathan Rajiswari, Chang Yi-Chien, Anton Brian P, Osmani Lais, Steffen Martin, Kasif Simon, Salzberg Steven L
Publikováno v:
Biology Direct, Vol 7, Iss 1, p 37 (2012)
Abstract Background The dramatic reduction in the cost of sequencing has allowed many researchers to join in the effort of sequencing and annotating prokaryotic genomes. Annotation methods vary considerably and may fail to identify some genes. Here w
Externí odkaz:
https://doaj.org/article/f6c142f4deac414fb3526bf747a0abf1
Autor:
Brian P Anton, Yi-Chien Chang, Peter Brown, Han-Pil Choi, Lina L Faller, Jyotsna Guleria, Zhenjun Hu, Niels Klitgord, Ami Levy-Moonshine, Almaz Maksad, Varun Mazumdar, Mark McGettrick, Lais Osmani, Revonda Pokrzywa, John Rachlin, Rajeswari Swaminathan, Benjamin Allen, Genevieve Housman, Caitlin Monahan, Krista Rochussen, Kevin Tao, Ashok S Bhagwat, Steven E Brenner, Linda Columbus, Valérie de Crécy-Lagard, Donald Ferguson, Alexey Fomenkov, Giovanni Gadda, Richard D Morgan, Andrei L Osterman, Dmitry A Rodionov, Irina A Rodionova, Kenneth E Rudd, Dieter Söll, James Spain, Shuang-Yong Xu, Alex Bateman, Robert M Blumenthal, J Martin Bollinger, Woo-Suk Chang, Manuel Ferrer, Iddo Friedberg, Michael Y Galperin, Julien Gobeill, Daniel Haft, John Hunt, Peter Karp, William Klimke, Carsten Krebs, Dana Macelis, Ramana Madupu, Maria J Martin, Jeffrey H Miller, Claire O'Donovan, Bernhard Palsson, Patrick Ruch, Aaron Setterdahl, Granger Sutton, John Tate, Alexander Yakunin, Dmitri Tchigvintsev, Germán Plata, Jie Hu, Russell Greiner, David Horn, Kimmen Sjölander, Steven L Salzberg, Dennis Vitkup, Stanley Letovsky, Daniel Segrè, Charles DeLisi, Richard J Roberts, Martin Steffen, Simon Kasif
Publikováno v:
PLoS Biology, Vol 11, Iss 8, p e1001638 (2013)
Externí odkaz:
https://doaj.org/article/08400167d9dc4fa29d1dc69cd0f6756f
Akademický článek
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Autor:
Christopher W. Whelan, David E. Kling, Stacey Gabriel, Ryan Poplin, Laura D. Gauthier, Ami Levy-Moonshine, Mauricio O. Carneiro, Mark A. DePristo, Monkol Lek, Timothy Fennell, Chandran S, Neale Bm, Khalid Shakir, Ruano-Rubio, Daniel G. MacArthur, Thibault J, Mark J. Daly, Eric Banks, Van der Auwera Ga, David Roazen
Comprehensive disease gene discovery in both common and rare diseases will require the efficient and accurate detection of all classes of genetic variation across tens to hundreds of thousands of human samples. We describe here a novel assembly-based
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::45a77772abf2ae757d9f818196e4d371
https://doi.org/10.1101/201178
https://doi.org/10.1101/201178
Autor:
Xi Shi, Madeline A. Lancaster, Zhe Ji, Adam L. Haber, Michele Busby, Xian Adiconis, Joshua Z. Levin, Jen Q. Pan, Justin Jacques, Sean Simmons, Ami Levy Moonshine, Aviv Regev
Publikováno v:
Nature methods
RNA-Seq is an effective method to study the transcriptome, but specialized methods are required to identify 5’ ends of transcripts. Several published strategies exist for this specific purpose, but their relative merits have not been systematically
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::38ca0ebc5ceec0d73c652cdfbd12f4e2
https://pubmed.ncbi.nlm.nih.gov/30459407
https://pubmed.ncbi.nlm.nih.gov/30459407
Autor:
Nathan Palmer, Isaac S. Kohane, Ami Levy-Moonshine, Peter Szolovits, Alal Eran, Paul Avillach, Yuan Luo
Publikováno v:
Nature medicine. 26(9)
The promise of precision medicine lies in data diversity. More than the sheer size of biomedical data, it is the layering of multiple data modalities, offering complementary perspectives, that is thought to enable the identification of patient subgro
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::02b4d6bc23c9124d492ff3a3ab3d84ba
https://pubmed.ncbi.nlm.nih.gov/32778826
https://pubmed.ncbi.nlm.nih.gov/32778826
Autor:
Jack A. Kosmicki, Mark A. DePristo, Mark I. McCarthy, Patrick F. Sullivan, Laramie E. Duncan, Ryan Poplin, David Neil Cooper, Mitja I. Kurki, Aarno Palotie, Hong-Hee Won, Dermot P.B. McGovern, John Danesh, Jose C. Florez, Grace Tiao, Anne H. O’Donnell-Luria, Timothy Fennell, Gad Getz, Douglas M. Ruderfer, Joanne Berghout, Mark J. Daly, Monkol Lek, Daniel P. Howrigan, Stacey Gabriel, Daniel P. Birnbaum, Ami Levy Moonshine, Michael Boehnke, Ben Weisburd, Ruth McPherson, Christine Stevens, Dongmei Yu, Sekar Kathiresan, Andrew J. Hill, James G. Wilson, James S. Ware, Hugh Watkins, Benjamin M. Neale, Khalid Shakir, David Altshuler, María Teresa Tusié-Luna, Lorena Orozco, James Zou, Samuel A. Rose, Menachem Fromer, Jeremiah M. Scharf, Daniel G. MacArthur, Namrata Gupta, Pamela Sklar, Eric Vallabh Minikel, Steven A. McCarroll, Jaakko Tuomilehto, Jackie Goldstein, Ming T. Tsuang, Stacey Donnelly, Konrad J. Karczewski, Fengmei Zhao, Stephen J. Glatt, Ron Do, Nicole A. Deflaux, Adam Kiezun, Emma Pierce-Hoffman, Markku Laakso, Beryl B. Cummings, Pradeep Natarajan, Danish Saleheen, Karol Estrada, Peter D. Stenson, Manuel A. Rivas, Diego Ardissino, Kaitlin E. Samocha, Gina M. Peloso, Laura D. Gauthier, Eric Banks, Brett Thomas, Shaun Purcell, Taru Tukiainen, Valentin Ruano-Rubio, Christina M. Hultman, Jason Flannick, Roberto Elosua
Publikováno v:
Lek, M, Karczewski, K J, Minikel, E V, Samocha, K E, Posthuma, D & Exome Aggregation Consortium, U 2016, ' Analysis of protein-coding genetic variation in 60,706 humans ', Nature, vol. 536, no. 7616, pp. 285-291 . https://doi.org/10.1038/nature19057
Nature, 536(7616), 285-291. Nature Publishing Group
Nature, vol 536, iss 7616
Nature, 536(7616), 285-291. Nature Publishing Group
Nature, vol 536, iss 7616
SummaryLarge-scale reference data sets of human genetic variation are critical for the medical and functional interpretation of DNA sequence changes. Here we describe the aggregation and analysis of high-quality exome (protein-coding region) sequence
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::d62da66cab8b3012619459d5ee3a67d5
https://doi.org/10.1038/nature19057
https://doi.org/10.1038/nature19057
Autor:
Michele Busby, Xi Shi, Xian Adiconis, Zhe Ji, Ami Levy Moonshine, Jen Q. Pan, Adam L. Haber, Madeline A. Lancaster, Justin Jacques, Joshua Z. Levin, Aviv Regev, Sean Simmons
Publikováno v:
Nature Methods. 15:1126-1126
The original version of this paper contained an incorrect primer sequence. In the Methods subsection “Rampage libraries,” the text for modification 3 stated that the reverse primer used for library indexing was 5′-CAAGCAGAAGACGGCATACGAGATXXXXXX
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8e70ff1930cd9f758ce5ced54d0774d5
https://doi.org/10.1038/s41592-018-0237-2
https://doi.org/10.1038/s41592-018-0237-2
Publikováno v:
Genome Biology
Allelic expression analysis has become important for integrating genome and transcriptome data to characterize various biological phenomena such as cis-regulatory variation and nonsense-mediated decay. We analyze the properties of allelic expression
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4c300b418915aa7ebc4cb68c9f799758
https://pubmed.ncbi.nlm.nih.gov/26381377
https://pubmed.ncbi.nlm.nih.gov/26381377
Allelic expression (AE) analysis has become an important tool for integrating genome and transcriptome data to characterize various biological phenomena such as cis-regulatory variation and nonsense-mediated decay. In this paper, we systematically an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f3b641a85a6b975d117548d54d5fbf44
https://doi.org/10.1101/016097
https://doi.org/10.1101/016097