Zobrazeno 1 - 10
of 206
pro vyhledávání: '"Levi Waldron"'
Autor:
Paolo Manghi, Michele Filosi, Moreno Zolfo, Lucas G. Casten, Albert Garcia-Valiente, Stefania Mattevi, Vitor Heidrich, Davide Golzato, Samuel Perini, Andrew M. Thomas, Simone Montalbano, Samuele Cancellieri, Levi Waldron, Jacob B. Hall, Simon Xu, Natalia Volfovsky, LeeAnne Green Snyder, Pamela Feliciano, Francesco Asnicar, Mireia Valles-Colomer, Jacob J. Michaelson, Nicola Segata, Enrico Domenici
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-18 (2024)
Abstract The link between the oral microbiome and neurodevelopmental disorders remains a compelling hypothesis, still requiring confirmation in large-scale datasets. Leveraging over 7000 whole-genome sequenced salivary samples from 2025 US families w
Externí odkaz:
https://doaj.org/article/edc3cac5e25745e7a1d9552f2f277166
Autor:
Amrisha Bhosle, Sena Bae, Yancong Zhang, Eunyoung Chun, Julian Avila-Pacheco, Ludwig Geistlinger, Gleb Pishchany, Jonathan N Glickman, Monia Michaud, Levi Waldron, Clary B Clish, Ramnik J Xavier, Hera Vlamakis, Eric A Franzosa, Wendy S Garrett, Curtis Huttenhower
Publikováno v:
Molecular Systems Biology, Vol 20, Iss 4, Pp 338-361 (2024)
Abstract Microbial biochemistry is central to the pathophysiology of inflammatory bowel diseases (IBD). Improved knowledge of microbial metabolites and their immunomodulatory roles is thus necessary for diagnosis and management. Here, we systematical
Externí odkaz:
https://doaj.org/article/9dc7c22482b749b1948ab95a7d3ce206
Autor:
Kelly B Eckenrode, Dario Righelli, Marcel Ramos, Ricard Argelaguet, Christophe Vanderaa, Ludwig Geistlinger, Aedin C Culhane, Laurent Gatto, Vincent Carey, Martin Morgan, Davide Risso, Levi Waldron
Publikováno v:
PLoS Computational Biology, Vol 19, Iss 8, p e1011324 (2023)
BackgroundThe majority of high-throughput single-cell molecular profiling methods quantify RNA expression; however, recent multimodal profiling methods add simultaneous measurement of genomic, proteomic, epigenetic, and/or spatial information on the
Externí odkaz:
https://doaj.org/article/5aceb3092f5d4538ae21806c28726846
Autor:
Sehyun Oh, Ludwig Geistlinger, Marcel Ramos, Daniel Blankenberg, Marius van den Beek, Jaclyn N. Taroni, Vincent J. Carey, Casey S. Greene, Levi Waldron, Sean Davis
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-10 (2022)
Many transcriptomic profiles have been deposited in public archives but are underused for the interpretation of experiments. Here the authors report GenomicSuperSignature for interpreting new transcriptomic datasets through comparison to public archi
Externí odkaz:
https://doaj.org/article/e7c9a9b82ea740e0a1f1e47256b18223
Autor:
Ateeq M. Khaliq, Cihat Erdogan, Zeyneb Kurt, Sultan Sevgi Turgut, Miles W. Grunvald, Tim Rand, Sonal Khare, Jeffrey A. Borgia, Dana M. Hayden, Sam G. Pappas, Henry R. Govekar, Audrey E. Kam, Jochen Reiser, Kiran Turaga, Milan Radovich, Yong Zang, Yingjie Qiu, Yunlong Liu, Melissa L. Fishel, Anita Turk, Vineet Gupta, Ram Al-Sabti, Janakiraman Subramanian, Timothy M. Kuzel, Anguraj Sadanandam, Levi Waldron, Arif Hussain, Mohammad Saleem, Bassel El-Rayes, Ameen A. Salahudeen, Ashiq Masood
Publikováno v:
Genome Biology, Vol 23, Iss 1, Pp 1-30 (2022)
Abstract Background Colorectal cancer (CRC) consensus molecular subtypes (CMS) have different immunological, stromal cell, and clinicopathological characteristics. Single-cell characterization of CMS subtype tumor microenvironments is required to elu
Externí odkaz:
https://doaj.org/article/ae2d60102a98447596fa9e335944c864
Autor:
Marcel Ramos, Ragheed Al-Dulaimi, Ayush Aggarwal, Sean Davis, Levi Waldron, Sehyun Oh, Jasmine Abdelnabi, Markus Riester
Publikováno v:
F1000Research, Vol 9 (2022)
Gene symbols are recognizable identifiers for gene names but are unstable and error-prone due to aliasing, manual entry, and unintentional conversion by spreadsheets to date format. Official gene symbol resources such as HUGO Gene Nomenclature Commit
Externí odkaz:
https://doaj.org/article/1751749a14ab4423ba9337547cd33f78
Publikováno v:
Genome Biology, Vol 21, Iss 1, Pp 1-31 (2020)
Abstract Background The correct identification of differentially abundant microbial taxa between experimental conditions is a methodological and computational challenge. Recent work has produced methods to deal with the high sparsity and compositiona
Externí odkaz:
https://doaj.org/article/72f396b4d602488fbac0268f323e93c7
Autor:
Denis Nash, Saba Qasmieh, McKaylee Robertson, Madhura Rane, Rebecca Zimba, Sarah G Kulkarni, Amanda Berry, William You, Chloe Mirzayi, Drew Westmoreland, Angela Parcesepe, Levi Waldron, Shivani Kochhar, Andrew R Maroko, Christian Grov, CHASING COVID Cohort Study Team
Publikováno v:
PLoS ONE, Vol 17, Iss 7, p e0271786 (2022)
ObjectiveTo investigate the role of children in the home and household crowding as risk factors for severe COVID-19 disease.MethodsWe used interview data from 6,831 U.S. adults screened for the Communities, Households and SARS/CoV-2 Epidemiology (CHA
Externí odkaz:
https://doaj.org/article/8f0b720c004f4f85b6a26657eaa90fb6
Autor:
Michael C. Schatz, Anthony A. Philippakis, Enis Afgan, Eric Banks, Vincent J. Carey, Robert J. Carroll, Alessandro Culotti, Kyle Ellrott, Jeremy Goecks, Robert L. Grossman, Ira M. Hall, Kasper D. Hansen, Jonathan Lawson, Jeffrey T. Leek, Anne O’Donnell Luria, Stephen Mosher, Martin Morgan, Anton Nekrutenko, Brian D. O’Connor, Kevin Osborn, Benedict Paten, Candace Patterson, Frederick J. Tan, Casey Overby Taylor, Jennifer Vessio, Levi Waldron, Ting Wang, Kristin Wuichet, Alexander Baumann, Andrew Rula, Anton Kovalsy, Clare Bernard, Derek Caetano-Anollés, Geraldine A. Van der Auwera, Justin Canas, Kaan Yuksel, Kate Herman, M. Morgan Taylor, Marianie Simeon, Michael Baumann, Qi Wang, Robert Title, Ruchi Munshi, Sushma Chaluvadi, Valerie Reeves, William Disman, Salin Thomas, Allie Hajian, Elizabeth Kiernan, Namrata Gupta, Trish Vosburg, Ludwig Geistlinger, Marcel Ramos, Sehyun Oh, Dave Rogers, Frances McDade, Mim Hastie, Nitesh Turaga, Alexander Ostrovsky, Alexandru Mahmoud, Dannon Baker, Dave Clements, Katherine E.L. Cox, Keith Suderman, Nataliya Kucher, Sergey Golitsynskiy, Samantha Zarate, Sarah J. Wheelan, Kai Kammers, Ana Stevens, Carolyn Hutter, Christopher Wellington, Elena M. Ghanaim, Ken L. Wiley, Jr., Shurjo K. Sen, Valentina Di Francesco, Deni s Yuen, Brian Walsh, Luke Sargent, Vahid Jalili, John Chilton, Lori Shepherd, B.J. Stubbs, Ash O’Farrell, Benton A. Vizzier, Jr., Charles Overbeck, Charles Reid, David Charles Steinberg, Elizabeth A. Sheets, Julian Lucas, Lon Blauvelt, Louise Cabansay, Noah Warren, Brian Hannafious, Tim Harris, Radhika Reddy, Eric Torstenson, M. Katie Banasiewicz, Haley J. Abel, Jason Walker
Publikováno v:
Cell Genomics, Vol 2, Iss 1, Pp 100085- (2022)
Summary: The NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space (AnVIL; https://anvilproject.org) was developed to address a widespread community need for a unified computing environment for genomics data storage, managemen
Externí odkaz:
https://doaj.org/article/95ac1623e901491c821d128f529da364
Autor:
Rebecca Zimba, Matthew L Romo, Sarah G Kulkarni, Amanda Berry, William You, Chloe Mirzayi, Drew A Westmoreland, Angela M Parcesepe, Levi Waldron, Madhura S Rane, Shivani Kochhar, McKaylee M Robertson, Andrew R Maroko, Christian Grov, Denis Nash
Publikováno v:
JMIR Public Health and Surveillance, Vol 7, Iss 12, p e32846 (2021)
BackgroundInadequate screening and diagnostic testing in the United States throughout the first several months of the COVID-19 pandemic led to undetected cases transmitting disease in the community and an underestimation of cases. Though testing supp
Externí odkaz:
https://doaj.org/article/426cee80d52d456daa5ca53db0bc1882