Zobrazeno 1 - 10
of 165
pro vyhledávání: '"Leonid Oliker"'
Autor:
Tiffany Oliver, Neha Varghese, Simon Roux, Frederik Schulz, Marcel Huntemann, Alicia Clum, Brian Foster, Bryce Foster, Robert Riley, Kurt LaButti, Robert Egan, Patrick Hajek, Supratim Mukherjee, Galina Ovchinnikova, T. B. K. Reddy, Sara Calhoun, Richard D. Hayes, Robin R. Rohwer, Zhichao Zhou, Chris Daum, Alex Copeland, I-Min A. Chen, Natalia N. Ivanova, Nikos C. Kyrpides, Nigel J. Mouncey, Tijana Glavina del Rio, Igor V. Grigoriev, Steven Hofmeyr, Leonid Oliker, Katherine Yelick, Karthik Anantharaman, Katherine D. McMahon, Tanja Woyke, Emiley A. Eloe-Fadrosh
Publikováno v:
Scientific Data, Vol 11, Iss 1, Pp 1-7 (2024)
Abstract The North Temperate Lakes Long-Term Ecological Research (NTL-LTER) program has been extensively used to improve understanding of how aquatic ecosystems respond to environmental stressors, climate fluctuations, and human activities. Here, we
Externí odkaz:
https://doaj.org/article/eedd08c620c9493ebd2d5a49aa266009
Autor:
Robert Riley, Robert M. Bowers, Antonio Pedro Camargo, Ashley Campbell, Rob Egan, Emiley A. Eloe-Fadrosh, Brian Foster, Steven Hofmeyr, Marcel Huntemann, Matthew Kellom, Jeffrey A. Kimbrel, Leonid Oliker, Katherine Yelick, Jennifer Pett-Ridge, Asaf Salamov, Neha J. Varghese, Alicia Clum
Publikováno v:
Microbiology Spectrum, Vol 11, Iss 4 (2023)
ABSTRACT Petabases of environmental metagenomic data are publicly available, presenting an opportunity to characterize complex environments and discover novel lineages of life. Metagenome coassembly, in which many metagenomic samples from an environm
Externí odkaz:
https://doaj.org/article/088811fc0e4a493e9fac4e98c3ef0738
Autor:
Muaaz G. Awan, Jack Deslippe, Aydin Buluc, Oguz Selvitopi, Steven Hofmeyr, Leonid Oliker, Katherine Yelick
Publikováno v:
BMC Bioinformatics, Vol 21, Iss 1, Pp 1-29 (2020)
Abstract Background Bioinformatic workflows frequently make use of automated genome assembly and protein clustering tools. At the core of most of these tools, a significant portion of execution time is spent in determining optimal local alignment bet
Externí odkaz:
https://doaj.org/article/ba6db4eab85947ebb0b072d8b847bbc4
Autor:
Michael Wehner, Marghoob Mohiyuddin, David Randall, Woo-Sun Yang, Huiro Miura, Norman Miller, Ross Heikes, Leonid Oliker, John Shalf, Shoaib Kamil, Celal Konor, David Donofrio, Leroy A. Drummond
Publikováno v:
Journal of Advances in Modeling Earth Systems, Vol 3, Pp M10003-22 pp. (2011)
We present an analysis of the performance aspects of an atmospheric general circulation model at the ultra-high resolution required to resolve individual cloud systems and describe alternative technological paths to realize the integration of such a
Externí odkaz:
https://doaj.org/article/f5248fa716d545f889154b6a0b6a11cb
Autor:
Nan Ding, Samuel Williams, Hai Ah Nam, Taylor Groves, Muaaz Gul Awan, LeAnn Lindsey, Christopher Daley, Oguz Selvitopi, Leonid Oliker, Nicholas Wright
Publikováno v:
2022 IEEE/ACM International Workshop on Resource Disaggregation in High-Performance Computing (REDIS).
Autor:
Khaled Z. Ibrahim, Leonid Oliker
Publikováno v:
2022 IEEE International Parallel and Distributed Processing Symposium (IPDPS).
Autor:
Fernando Meyer, Adrian Fritz, Zhi-Luo Deng, David Koslicki, Till Robin Lesker, Alexey Gurevich, Gary Robertson, Mohammed Alser, Dmitry Antipov, Francesco Beghini, Denis Bertrand, Jaqueline J. Brito, C. Titus Brown, Jan Buchmann, Aydin Buluç, Bo Chen, Rayan Chikhi, Philip T. L. C. Clausen, Alexandru Cristian, Piotr Wojciech Dabrowski, Aaron E. Darling, Rob Egan, Eleazar Eskin, Evangelos Georganas, Eugene Goltsman, Melissa A. Gray, Lars Hestbjerg Hansen, Steven Hofmeyr, Pingqin Huang, Luiz Irber, Huijue Jia, Tue Sparholt Jørgensen, Silas D. Kieser, Terje Klemetsen, Axel Kola, Mikhail Kolmogorov, Anton Korobeynikov, Jason Kwan, Nathan LaPierre, Claire Lemaitre, Chenhao Li, Antoine Limasset, Fabio Malcher-Miranda, Serghei Mangul, Vanessa R. Marcelino, Camille Marchet, Pierre Marijon, Dmitry Meleshko, Daniel R. Mende, Alessio Milanese, Niranjan Nagarajan, Jakob Nissen, Sergey Nurk, Leonid Oliker, Lucas Paoli, Pierre Peterlongo, Vitor C. Piro, Jacob S. Porter, Simon Rasmussen, Evan R. Rees, Knut Reinert, Bernhard Renard, Espen Mikal Robertsen, Gail L. Rosen, Hans-Joachim Ruscheweyh, Varuni Sarwal, Nicola Segata, Enrico Seiler, Lizhen Shi, Fengzhu Sun, Shinichi Sunagawa, Søren Johannes Sørensen, Ashleigh Thomas, Chengxuan Tong, Mirko Trajkovski, Julien Tremblay, Gherman Uritskiy, Riccardo Vicedomini, Zhengyang Wang, Ziye Wang, Zhong Wang, Andrew Warren, Nils Peder Willassen, Katherine Yelick, Ronghui You, Georg Zeller, Zhengqiao Zhao, Shanfeng Zhu, Jie Zhu, Ruben Garrido-Oter, Petra Gastmeier, Stephane Hacquard, Susanne Häußler, Ariane Khaledi, Friederike Maechler, Fantin Mesny, Simona Radutoiu, Paul Schulze-Lefert, Nathiana Smit, Till Strowig, Andreas Bremges, Alexander Sczyrba, Alice Carolyn McHardy
Publikováno v:
Nature Methods
Meyer, F, Fritz, A, Deng, Z L, Koslicki, D, Lesker, T R, Gurevich, A, Robertson, G, Alser, M, Antipov, D, Beghini, F, Bertrand, D, Brito, J J, Brown, C T, Buchmann, J, Buluç, A, Chen, B, Chikhi, R, Clausen, P T L C, Cristian, A, Dabrowski, P W, Darling, A E, Egan, R, Eskin, E, Georganas, E, Goltsman, E, Gray, M A, Hansen, L H, Hofmeyr, S, Huang, P, Irber, L, Jia, H, Jørgensen, T S, Kieser, S D, Klemetsen, T, Kola, A, Kolmogorov, M, Korobeynikov, A, Kwan, J, LaPierre, N, Lemaitre, C, Li, C, Limasset, A, Malcher-Miranda, F, Mangul, S, Marcelino, V R, Marchet, C, Marijon, P, Meleshko, D, Mende, D R, Milanese, A, Nagarajan, N, Nissen, J, Nurk, S, Oliker, L, Paoli, L, Peterlongo, P, Piro, V C, Porter, J S, Rasmussen, S, Rees, E R, Reinert, K, Renard, B, Robertsen, E M, Rosen, G L, Ruscheweyh, H J, Sarwal, V, Segata, N, Seiler, E, Shi, L, Sun, F, Sunagawa, S, Sørensen, S J, Thomas, A, Tong, C, Trajkovski, M, Tremblay, J, Uritskiy, G, Vicedomini, R, Wang, Z, Wang, Z, Wang, Z, Warren, A, Willassen, N P, Yelick, K, You, R, Zeller, G, Zhao, Z, Zhu, S, Zhu, J, Garrido-Oter, R, Gastmeier, P, Hacquard, S, Häußler, S, Khaledi, A, Maechler, F, Mesny, F, Radutoiu, S, Schulze-Lefert, P, Smit, N, Strowig, T, Bremges, A, Sczyrba, A & McHardy, A C 2022, ' Critical Assessment of Metagenome Interpretation : the second round of challenges ', Nature Methods, vol. 19, no. 4, pp. 429-440 . https://doi.org/10.1038/s41592-022-01431-4
Nature Methods, 2022, 19 (4), pp.429-440. ⟨10.1038/s41592-022-01431-4⟩
Nature methods, 19(4), 429-440. Nature Publishing Group
Meyer, F, Fritz, A, Deng, Z-L, Koslicki, D, Lesker, T R, Gurevich, A, Robertson, G, Alser, M, Antipov, D, Beghini, F, Bertrand, D, Brito, J J, Brown, C T, Buchmann, J, Buluç, A, Chen, B, Chikhi, R, Clausen, P T L C, Cristian, A, Dabrowski, P W, Darling, A E, Egan, R, Eskin, E, Georganas, E, Goltsman, E, Gray, M A, Hansen, L H, Hofmeyr, S, Huang, P, Irber, L, Jia, H, Jørgensen, T S, Kieser, S D, Klemetsen, T, Kola, A, Kolmogorov, M, Korobeynikov, A, Kwan, J, LaPierre, N, Lemaitre, C, Li, C, Limasset, A, Malcher-Miranda, F, Mangul, S, Marcelino, V R, Marchet, C, Marijon, P, Meleshko, D, Mende, D R, Milanese, A, Nagarajan, N, Nissen, J, Nurk, S, Oliker, L, Paoli, L, Peterlongo, P, Piro, V C, Porter, J S, Rasmussen, S, Rees, E R, Reinert, K, Renard, B, Robertsen, E M, Rosen, G L, Ruscheweyh, H-J, Sarwal, V, Segata, N, Seiler, E, Shi, L, Sun, F, Sunagawa, S, Sørensen, S J, Thomas, A, Tong, C, Trajkovski, M, Tremblay, J, Uritskiy, G, Vicedomini, R, Wang, Z, Wang, Z, Wang, Z, Warren, A, Willassen, N P, Yelick, K, You, R, Zeller, G, Zhao, Z, Zhu, S, Zhu, J, Garrido-Oter, R, Gastmeier, P, Hacquard, S, Häußler, S, Khaledi, A, Maechler, F, Mesny, F, Radutoiu, S, Schulze-Lefert, P, Smit, N, Strowig, T, Bremges, A, Sczyrba, A & McHardy, A C 2022, ' Critical Assessment of Metagenome Interpretation : the second round of challenges ', Nature Methods, vol. 19, no. 4, pp. 429-440 . https://doi.org/10.1038/s41592-022-01431-4
Nature Methods, 19 (8)
Meyer, F, Fritz, A, Deng, Z L, Koslicki, D, Lesker, T R, Gurevich, A, Robertson, G, Alser, M, Antipov, D, Beghini, F, Bertrand, D, Brito, J J, Brown, C T, Buchmann, J, Buluç, A, Chen, B, Chikhi, R, Clausen, P T L C, Cristian, A, Dabrowski, P W, Darling, A E, Egan, R, Eskin, E, Georganas, E, Goltsman, E, Gray, M A, Hansen, L H, Hofmeyr, S, Huang, P, Irber, L, Jia, H, Jørgensen, T S, Kieser, S D, Klemetsen, T, Kola, A, Kolmogorov, M, Korobeynikov, A, Kwan, J, LaPierre, N, Lemaitre, C, Li, C, Limasset, A, Malcher-Miranda, F, Mangul, S, Marcelino, V R, Marchet, C, Marijon, P, Meleshko, D, Mende, D R, Milanese, A, Nagarajan, N, Nissen, J, Nurk, S, Oliker, L, Paoli, L, Peterlongo, P, Piro, V C, Porter, J S, Rasmussen, S, Rees, E R, Reinert, K, Renard, B, Robertsen, E M, Rosen, G L, Ruscheweyh, H J, Sarwal, V, Segata, N, Seiler, E, Shi, L, Sun, F, Sunagawa, S, Sørensen, S J, Thomas, A, Tong, C, Trajkovski, M, Tremblay, J, Uritskiy, G, Vicedomini, R, Wang, Z, Wang, Z, Wang, Z, Warren, A, Willassen, N P, Yelick, K, You, R, Zeller, G, Zhao, Z, Zhu, S, Zhu, J, Garrido-Oter, R, Gastmeier, P, Hacquard, S, Häußler, S, Khaledi, A, Maechler, F, Mesny, F, Radutoiu, S, Schulze-Lefert, P, Smit, N, Strowig, T, Bremges, A, Sczyrba, A & McHardy, A C 2022, ' Critical Assessment of Metagenome Interpretation : the second round of challenges ', Nature Methods, vol. 19, no. 4, pp. 429-440 . https://doi.org/10.1038/s41592-022-01431-4
Nature Methods, 2022, 19 (4), pp.429-440. ⟨10.1038/s41592-022-01431-4⟩
Nature methods, 19(4), 429-440. Nature Publishing Group
Meyer, F, Fritz, A, Deng, Z-L, Koslicki, D, Lesker, T R, Gurevich, A, Robertson, G, Alser, M, Antipov, D, Beghini, F, Bertrand, D, Brito, J J, Brown, C T, Buchmann, J, Buluç, A, Chen, B, Chikhi, R, Clausen, P T L C, Cristian, A, Dabrowski, P W, Darling, A E, Egan, R, Eskin, E, Georganas, E, Goltsman, E, Gray, M A, Hansen, L H, Hofmeyr, S, Huang, P, Irber, L, Jia, H, Jørgensen, T S, Kieser, S D, Klemetsen, T, Kola, A, Kolmogorov, M, Korobeynikov, A, Kwan, J, LaPierre, N, Lemaitre, C, Li, C, Limasset, A, Malcher-Miranda, F, Mangul, S, Marcelino, V R, Marchet, C, Marijon, P, Meleshko, D, Mende, D R, Milanese, A, Nagarajan, N, Nissen, J, Nurk, S, Oliker, L, Paoli, L, Peterlongo, P, Piro, V C, Porter, J S, Rasmussen, S, Rees, E R, Reinert, K, Renard, B, Robertsen, E M, Rosen, G L, Ruscheweyh, H-J, Sarwal, V, Segata, N, Seiler, E, Shi, L, Sun, F, Sunagawa, S, Sørensen, S J, Thomas, A, Tong, C, Trajkovski, M, Tremblay, J, Uritskiy, G, Vicedomini, R, Wang, Z, Wang, Z, Wang, Z, Warren, A, Willassen, N P, Yelick, K, You, R, Zeller, G, Zhao, Z, Zhu, S, Zhu, J, Garrido-Oter, R, Gastmeier, P, Hacquard, S, Häußler, S, Khaledi, A, Maechler, F, Mesny, F, Radutoiu, S, Schulze-Lefert, P, Smit, N, Strowig, T, Bremges, A, Sczyrba, A & McHardy, A C 2022, ' Critical Assessment of Metagenome Interpretation : the second round of challenges ', Nature Methods, vol. 19, no. 4, pp. 429-440 . https://doi.org/10.1038/s41592-022-01431-4
Nature Methods, 19 (8)
Evaluating metagenomic software is key for optimizing metagenome interpretation and focus of the Initiative for the Critical Assessment of Metagenome Interpretation (CAMI). The CAMI II challenge engaged the community to assess methods on realistic an
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e6a457600da700f14909805684c3378a
https://hdl.handle.net/10453/163369
https://hdl.handle.net/10453/163369
Autor:
Rob Egan, Jack Deslippe, Nan Ding, Leonid Oliker, Steven Hofmeyr, Aydin Buluc, Katherine Yelick, Muaaz Gul Awan
Publikováno v:
SC
Metagenomic workflows involve studying uncultured microorganisms directly from the environment. These environmental samples when processed by modern sequencing machines yield large and complex datasets that exceed the capabilities of metagenomic soft
Autor:
Khaled Z. Ibrahim, Tan Nguyen, Hai Ah Nam, Wahid Bhimji, Steven Farrell, Leonid Oliker, Michael Rowan, Nicholas J. Wright, Samuel Williams
Publikováno v:
2021 International Workshop on Performance Modeling, Benchmarking and Simulation of High Performance Computer Systems (PMBS).
Autor:
Brian Austin, Ray Bair, Kevin Barker, Anthony Cabrera, Andrew Chien, Nan Ding, Jesun Firoz, Khaled Ibrahim, Joseph Manzano, Vitali Morozov, Tan Nguyen, Leonid Oliker, Joshua Suetterlein, Li Tang, Jeffrey Vetter, Samuel Williams, Kazutomo Yoshii, Aaron Young
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::8744bb91074a50024c557b9301d2b5df
https://doi.org/10.2172/1841724
https://doi.org/10.2172/1841724