Integration of DNA Methylation and Transcriptome Data Improves Complex Trait Prediction in Hordeum vulgare

Autor: Pernille Bjarup Hansen, Anja Karine Ruud, Gustavo de los Campos, Marta Malinowska, Istvan Nagy, Simon Fiil Svane, Kristian Thorup-Kristensen, Jens Due Jensen, Lene Krusell, Torben Asp

Publikováno v: Plants, Vol 11, Iss 17, p 2190 (2022)

Whole-genome multi-omics profiles contain valuable information for the characterization and prediction of complex traits in plants. In this study, we evaluate multi-omics models to predict four complex traits in barley (Hordeum vulgare); grain yield,

Externí odkaz: https://doaj.org/article/bcb6cfd6a4b84acf92495b87dfb3ee69

Identification of Ideal Allele Combinations for the Adaptation of Spring Barley to Northern Latitudes

Autor: Magnus Göransson, Jón Hallsteinn Hallsson, Morten Lillemo, Jihad Orabi, Gunter Backes, Ahmed Jahoor, Jónatan Hermannsson, Therese Christerson, Stine Tuvesson, Bo Gertsson, Lars Reitan, Muath Alsheikh, Reino Aikasalo, Mika Isolahti, Merja Veteläinen, Marja Jalli, Lene Krusell, Rasmus L. Hjortshøj, Birger Eriksen, Therése Bengtsson

Publikováno v: Frontiers in Plant Science, Vol 10 (2019)

The northwards expansion of barley production requires adaptation to longer days, lower temperatures and stronger winds during the growing season. We have screened 169 lines of the current barley breeding gene pool in the Nordic region with regards t

Externí odkaz: https://doaj.org/article/550afe8e4a6040c682018335029c1c0d

A Novel QTL for Powdery Mildew Resistance in Nordic Spring Barley (Hordeum vulgare L. ssp. vulgare) Revealed by Genome-Wide Association Study

Autor: Therése Bengtsson, Inger Åhman, Outi Manninen, Lars Reitan, Therese Christerson, Jens Due Jensen, Lene Krusell, Ahmed Jahoor, Jihad Orabi

Publikováno v: Frontiers in Plant Science, Vol 8 (2017)

The powdery mildew fungus, Blumeria graminis f. sp. hordei is a worldwide threat to barley (Hordeum vulgare L. ssp. vulgare) production. One way to control the disease is by the development and deployment of resistant cultivars. A genome-wide associa

Externí odkaz: https://doaj.org/article/a776fa77987b40998721fc425df38028

Genetics of Symbiosis in Lotus japonicus: Recombinant Inbred Lines, Comparative Genetic Maps, and Map Position of 35 Symbiotic Loci

Autor: Niels Sandal, Thomas Rørby Petersen, Jeremy Murray, Yosuke Umehara, Bogumil Karas, Koji Yano, Hirotaka Kumagai, Makoto Yoshikawa, Katsuharu Saito, Masaki Hayashi, Yasuhiro Murakami, Xinwang Wang, Tsuneo Hakoyama, Haruko Imaizumi-Anraku, Shusei Sato, Tomohiko Kato, Wenli Chen, Md. Shakhawat Hossain, Satoshi Shibata, Trevor L. Wang, Keisuke Yokota, Knud Larsen, Norihito Kanamori, Esben Madsen, Simona Radutoiu, Lene H. Madsen, Talida Gratiela Radu, Lene Krusell, Yasuhiro Ooki, Mari Banba, Marco Betti, Nicolas Rispail, Leif Skøt, Elaine Tuck, Jillian Perry, Satoko Yoshida, Kate Vickers, Jodie Pike, Lonneke Mulder, Myriam Charpentier, Judith Müller, Ryo Ohtomo, Tomoko Kojima, Shotaro Ando, Antonio J. Marquez, Peter M. Gresshoff, Kyuya Harada, Judith Webb, Shingo Hata, Norio Suganuma, Hiroshi Kouchi, Shinji Kawasaki, Satoshi Tabata, Makoto Hayashi, Martin Parniske, Krzysztof Szczyglowski, Masayoshi Kawaguchi, Jens Stougaard

Publikováno v: Molecular Plant-Microbe Interactions, Vol 19, Iss 1, Pp 80-91 (2006)

Development of molecular tools for the analysis of the plant genetic contribution to rhizobial and mycorrhizal symbiosis has provided major advances in our understanding of plant-microbe interactions, and several key symbiotic genes have been identif

Externí odkaz: https://doaj.org/article/e7985714b4744749b2aff5bf870cd5a9

The cytosine methylation landscape of spring barley revealed by a new reduced representation bisulfite sequencing pipeline, WellMeth

Autor: Christian Sig Jensen, Kristian Thorup-Kristensen, J. D. Jensen, Torben Asp, Cornelis A. M. Wagemaker, Marta Malinowska, Istvan Nagy, Lene Krusell, Birger Eriksen, Lars Bonde Eriksen, Simon F. Svane, Ahmed Jahoor, Anja K Ruud

Publikováno v: The Plant Genome, 13, 3, pp. 1-18
The Plant Genome, 13, 1-18
Malinowska, M, Nagy, I, Wagemaker, C A M, Ruud, A K, Svane, S F, Thorup-Kristensen, K, Jensen, C S, Eriksen, B, Krusell, L, Jahoor, A, Jensen, J, Eriksen, L B & Asp, T 2020, ' The cytosine methylation landscape of spring barley revealed by a new reduced representation bisulfite sequencing pipeline, WellMeth ', The Plant Genome, vol. 13, no. 3, pp. e20049 . https://doi.org/10.1002/tpg2.20049
Malinowska, M, Nagy, I, Wagemaker, C A M, Ruud, A K, Svane, S F, Thorup-Kristensen, K, Jensen, C S, Eriksen, B, Krusell, L, Jahoor, A, Jensen, J, Eriksen, L B & Asp, T 2020, ' The cytosine methylation landscape of spring barley revealed by a new reduced representation bisulfite sequencing pipeline, WellMeth ', The Plant Genome, vol. 13, no. 3, 20049 . https://doi.org/10.1002/tpg2.20049
The Plant Genome, Vol 13, Iss 3, Pp n/a-n/a (2020)

Patterns and level of cytosine methylation vary widely among plant species and are associated with genome size as well as the proportion of transposons and other repetitive elements in the genome. We explored epigenetic patterns and diversity in a re

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::37020865759e8d79b5fca6c5701cca1d