R-Syst::diatom: an open-access and curated barcode database for diatoms and freshwater monitoring

Autor: François Keck, Philippe Chaumeil, Alain Franc, Valentin Vasselon, Lenaïg Kermarrec, Frédéric Rimet, Maria Kahlert, Agnès Bouchez

Publikováno v: Database-The journal of Biological Databases and Curation
Database-The journal of Biological Databases and Curation, Oxford University Press, 2016, 2016, ⟨10.1093/database/baw016⟩
Database-The journal of Biological Databases and Curation, 2016, 2016, pp.baw016. ⟨10.1093/database/baw016⟩
Database-The journal of Biological Databases and Curation, Oxford University Press, 2016, 2016, pp.baw016. ⟨10.1093/database/baw016⟩
Database (2016), baw016. (2016)
Database: The Journal of Biological Databases and Curation

Diatoms are micro-algal indicators of freshwater pollution. Current standardized methodologies are based on microscopic determinations, which is time consuming and prone to identification uncertainties. The use of DNA-barcoding has been proposed as a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::46b8ff7cf674b77f65396842cb71e815
https://hal.inria.fr/hal-01426772

When is sampling complete? The effects of geographical range and marker choice on perceived diversity in Nitzschia palea (Bacillariophyta)

Autor: Rosa Trobajo, Lenaïg Kermarrec, Frédéric Rimet, Isabelle Domaizon, David G. Mann, Agnès Bouchez, Alain Franc

Publikováno v: Protist
Protist, Elsevier, 2014, 165 (3), pp.245-259. ⟨10.1016/j.protis.2014.03.005⟩

International audience; DNA barcoding, being developed for biomonitoring, requires a database of reference sequences and knowledge of how much sequences can deviate before they are assigned to separate species. The molecular hunt for hidden species a

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::be6a8cd3bb2ef5d44eb458c811a2eab9
https://pubmed.ncbi.nlm.nih.gov/24739436

First Evidence of the Existence of Semi-Cryptic Species and of a Phylogeographic Structure in the Gomphonema parvulum (Kutzing) Kutzing Complex (Bacillariophyta)

Autor: Agnès Bouchez, Lenaïg Kermarrec, Frédéric Rimet, Jean-François Humbert

Publikováno v: Protist
Protist, 2013, 164 (5), pp.686-705. ⟨10.1016/j.protis.2013.07.005⟩
Protist, Elsevier, 2013, 164 (5), pp.686-705. ⟨10.1016/j.protis.2013.07.005⟩

International audience; The Gomphonema parvulum complex includes species displaying considerable morphological variability and a wide geographical distribution. These characteristics make them difficult to identify by microscopy and raise the questio

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6f78fcc9a01df7e079df264f1ee6bb77
https://hal.inrae.fr/hal-02645491

A pipeline for automatic taxonomic community inventories on data from NGS : an example with freshwater diatoms

Autor: Lenaïg Kermarrec, Philippe Chaumeil, Frédéric Rimet, Jean-Marc Frigerio, Valerie Laval, Marc-Henri Lebrun, Agnès Bouchez, Alain Franc

Publikováno v: 4th International Barcode of Life Conference
4th International Barcode of Life Conference, Nov 2011, Adélaide, Australia. 1p
4th International Barcode of Life Conference, Adélaide, AUS, 2011-11-28-2011-12-03
4th International Barcode of Life Conference, University of Adelaide. Adélaide, AUS., Nov 2011, Adélaide, Australia. 1p
HAL

absent

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::dd1744dbf7ac11c6b5e64a886a57f6fe
https://hal.archives-ouvertes.fr/hal-00999998

Efficiency of 3 genetic markers to determine the composition of a diatom assemblage using next generation sequencing

Autor: Lenaïg Kermarrec, Frédéric Rimet, Alain Franc, Philippe Chaumeil, Jean Francois Humbert, Agnès Bouchez

Publikováno v: 4thInternational Barcode of Life Conference, Adélaide, AUS, 2011-11-28-2011-12-03
4thInternational Barcode of Life Conference
4thInternational Barcode of Life Conference, University of Adelaide. Adélaide, AUS., Nov 2011, Adélaide, Australia. 1p
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International audience

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::98005ea10ed82361d2c08a09abc6f3e8
http://hdl.handle.net/20.500.12278/107089