Zobrazeno 1 - 10
of 1 378
pro vyhledávání: '"Lemey, P."'
Autor:
Brusselmans, Marius, Carvalho, Luiz Max, Hong, Samuel L., Gao, Jiansi, Matsen IV, Frederick A., Rambaut, Andrew, Lemey, Philippe, Suchard, Marc A., Dudas, Gytis, Baele, Guy
Modern phylogenetics research is often performed within a Bayesian framework, using sampling algorithms such as Markov chain Monte Carlo (MCMC) to approximate the posterior distribution. These algorithms require careful evaluation of the quality of t
Externí odkaz:
http://arxiv.org/abs/2402.11657
Autor:
Cheraghinia, Mohammad, Shahid, Adnan, Luchie, Stijn, Gordebeke, Gert-Jan, Caytan, Olivier, Fontaine, Jaron, Van Herbruggen, Ben, Lemey, Sam, De Poorter, Eli
Due to their large bandwidth, relatively low cost, and robust performance, UWB radio chips can be used for a wide variety of applications, including localization, communication, and radar. This article offers an exhaustive survey of recent progress i
Externí odkaz:
http://arxiv.org/abs/2402.05649
Autor:
Lin, Chin-Yi, Chen, Kuo-Chin, Lemey, Philippe, Suchard, Marc A., Holbrook, Andrew J., Hsieh, Min-Hsiu
Multiproposal Markov chain Monte Carlo (MCMC) algorithms choose from multiple proposals at each iteration in order to sample from challenging target distributions more efficiently. Recent work demonstrates the possibility of quadratic quantum speedup
Externí odkaz:
http://arxiv.org/abs/2312.01402
Autor:
Magee, Andrew F., Holbrook, Andrew J., Pekar, Jonathan E., Caviedes-Solis, Itzue W., Matsen IV, Fredrick A., Baele, Guy, Wertheim, Joel O., Ji, Xiang, Lemey, Philippe, Suchard, Marc A.
Phylogenetic and discrete-trait evolutionary inference depend heavily on an appropriate characterization of the underlying character substitution process. In this paper, we present random-effects substitution models that extend common continuous-time
Externí odkaz:
http://arxiv.org/abs/2303.13642
Autor:
Gangavarapu, Karthik, Ji, Xiang, Baele, Guy, Fourment, Mathieu, Lemey, Philippe, Matsen IV, Frederick A., Suchard, Marc A.
The rapid growth in genomic pathogen data spurs the need for efficient inference techniques, such as Hamiltonian Monte Carlo (HMC) in a Bayesian framework, to estimate parameters of these phylogenetic models where the dimensions of the parameters inc
Externí odkaz:
http://arxiv.org/abs/2303.04390
Autor:
Annefleur C. Langedijk, Bram Vrancken, Robert Jan Lebbink, Deidre Wilkins, Elizabeth J. Kelly, Eugenio Baraldi, Abiel Homero Mascareñas de Los Santos, Daria M. Danilenko, Eun Hwa Choi, María Angélica Palomino, Hsin Chi, Christian Keller, Robert Cohen, Jesse Papenburg, Jeffrey Pernica, Anne Greenough, Peter Richmond, Federico Martinón-Torres, Terho Heikkinen, Renato T. Stein, Mitsuaki Hosoya, Marta C. Nunes, Charl Verwey, Anouk Evers, Leyla Kragten-Tabatabaie, Marc A. Suchard, Sergei L. Kosakovsky Pond, Chiara Poletto, Vittoria Colizza, Philippe Lemey, Louis J. Bont, on behalf of the INFORM-RSV Study Group
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-12 (2024)
Abstract Respiratory syncytial virus (RSV) is a leading cause of acute lower respiratory tract infection in young children and the second leading cause of infant death worldwide. While global circulation has been extensively studied for respiratory v
Externí odkaz:
https://doaj.org/article/45e7038869c54007951a43a1f120bf0b
Autor:
Benjamin Faucher, Chiara E. Sabbatini, Peter Czuppon, Moritz U. G. Kraemer, Philippe Lemey, Vittoria Colizza, François Blanquart, Pierre-Yves Boëlle, Chiara Poletto
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)
Abstract SARS-CoV-2 variants of concern (VOCs) circulated cryptically before being identified as a threat, delaying interventions. Here we studied the drivers of such silent spread and its epidemic impact to inform future response planning. We focuse
Externí odkaz:
https://doaj.org/article/839dc0eefe7e47308635fa75d4d49ae4
Autor:
Raffaella Ravinetto, Jean-Pierre Van Geertruyden, Pierre Van Damme, Gwen Lemey, Ynke Larivière, Vivi Maketa, Patrick Mitashi, Trésor Zola, Hypolite Muhindo-Mavoko, Bernard Isekah Osang'ir, Primo Kimbulu, Solange Milolo, Engbu Danoff, Yves Tchuma
Publikováno v:
BMJ Global Health, Vol 9, Iss 6 (2024)
Introduction Clear guidelines to implement ancillary care (AC) in clinical trials conducted in resource-constrained settings are lacking. Here, we evaluate an AC policy developed for a vaccine trial in the Democratic Republic of the Congo and formula
Externí odkaz:
https://doaj.org/article/e8f66ac3270441acb14aff89245f0d47
Autor:
Tiago Gräf, Alexander A. Martinez, Gonzalo Bello, Simon Dellicour, Philippe Lemey, Vittoria Colizza, Mattia Mazzoli, Chiara Poletto, Vanessa Leiko Oikawa Cardoso, Alexandre Freitas da Silva, COVIGEN, Fernando Couto Motta, Paola Cristina Resende, Marilda M. Siqueira, Leticia Franco, Lionel Gresh, Jean-Marc Gabastou, Angel Rodriguez, Andrea Vicari, Sylvain Aldighieri, Jairo Mendez-Rico, Juliana Almeida Leite
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-11 (2024)
Abstract Latin America and Caribbean (LAC) regions were an important epicenter of the COVID-19 pandemic and SARS-CoV-2 evolution. Through the COVID-19 Genomic Surveillance Regional Network (COVIGEN), LAC countries produced an important number of geno
Externí odkaz:
https://doaj.org/article/9d0741c920d340f98f488cc3191a1ab2
Autor:
Qiqi Yang, Ben Wang, Phillipe Lemey, Lu Dong, Tong Mu, R. Alex Wiebe, Fengyi Guo, Nídia Sequeira Trovão, Sang Woo Park, Nicola Lewis, Joseph L.-H. Tsui, Sumali Bajaj, Yachang Cheng, Luojun Yang, Yuki Haba, Bingying Li, Guogang Zhang, Oliver G. Pybus, Huaiyu Tian, Bryan Grenfell
Publikováno v:
Nature Communications, Vol 15, Iss 1, Pp 1-13 (2024)
Abstract Highly pathogenic avian influenza virus (HPAIV) A H5, particularly clade 2.3.4.4, has caused worldwide outbreaks in domestic poultry, occasional spillover to humans, and increasing deaths of diverse species of wild birds since 2014. Wild bir
Externí odkaz:
https://doaj.org/article/6a127744872b4dc9a3789c73d17d0bdb