Zobrazeno 1 - 10
of 10
pro vyhledávání: '"Leily Rabbani"'
Autor:
Zahra Haider, Tove Wästerlid, Linn Deleskog Spångberg, Leily Rabbani, Cecilia Jylhä, Birna Thorvaldsdottir, Aron Skaftason, Hero Nikdin Awier, Aleksandra Krstic, Anna Gellerbring, Anna Lyander, Moa Hägglund, Ashwini Jeggari, Georgios Rassidakis, Kristina Sonnevi, Birgitta Sander, Richard Rosenquist, Emma Tham, Karin E. Smedby
Publikováno v:
Frontiers in Oncology, Vol 13 (2023)
IntroductionAnalyzing liquid biopsies for tumor-specific aberrations can facilitate detection of measurable residual disease (MRD) during treatment and at follow-up. In this study, we assessed the clinical potential of using whole-genome sequencing (
Externí odkaz:
https://doaj.org/article/d9f81232bcd743c6ba826c8c6e6a8a2b
Autor:
Dafne Ibarra-Morales, Michael Rauer, Piergiuseppe Quarato, Leily Rabbani, Fides Zenk, Mariana Schulte-Sasse, Francesco Cardamone, Alejandro Gomez-Auli, Germano Cecere, Nicola Iovino
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-14 (2021)
During embryogenesis, the genome becomes transcriptionally active in a process known as zygotic genome activation (ZGA); how ZGA is initiated is still an open question. Here the authors show histone variant H2A.Z deposition precedes RNA polymerase II
Externí odkaz:
https://doaj.org/article/0266ce08d5fc4cb9bd1de6a83d2425e9
Autor:
Filippo Ciabrelli, Leily Rabbani, Francesco Cardamone, Fides Zenk, Eva Löser, Melanie A. Schächtle, Marina Mazina, Vincent Loubiere, Nicola Iovino
Publikováno v:
Science Advances
Zygotic genome activation (ZGA) is a crucial step of embryonic development. So far, little is known about the role of chromatin factors during this process. Here, we used an in vivo RNA interference reverse genetic screen to identify chromatin factor
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::44e6d28a22000328e061681fae61f0bd
https://doi.org/10.1126/sciadv.adf2687
https://doi.org/10.1126/sciadv.adf2687
Autor:
Alejandro Gomez-Auli, Nicola Iovino, Michael Rauer, Dafne Ibarra-Morales, Mariana Schulte-Sasse, Francesco Cardamone, Leily Rabbani, Piergiuseppe Quarato, Fides Zenk, Germano Cecere
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-14 (2021)
Nature Communications
Nature Communications, Nature Publishing Group, 2021, 12 (1), pp.7002. ⟨10.1038/s41467-021-27125-7⟩
Nature Communications, 12 (1)
Nature Communications, 2021, 12 (1), pp.7002. ⟨10.1038/s41467-021-27125-7⟩
Nature Communications
Nature Communications, Nature Publishing Group, 2021, 12 (1), pp.7002. ⟨10.1038/s41467-021-27125-7⟩
Nature Communications, 12 (1)
Nature Communications, 2021, 12 (1), pp.7002. ⟨10.1038/s41467-021-27125-7⟩
During embryogenesis, the genome shifts from transcriptionally quiescent to extensively active in a process known as Zygotic Genome Activation (ZGA). In Drosophila, the pioneer factor Zelda is known to be essential for the progression of development;
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7911d2dde2a04081f895092d6c6f58d5
https://doaj.org/article/0266ce08d5fc4cb9bd1de6a83d2425e9
https://doaj.org/article/0266ce08d5fc4cb9bd1de6a83d2425e9
Autor:
Gautier Richard, Leily Rabbani, Thomas Manke, Björn Grüning, Joachim Wolff, Ralf Gilsbach, Rolf Backofen
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, 2020, 48 (W1), pp.W177-W184. ⟨10.1093/nar/gkaa220⟩
Nucleic Acids Research, Oxford University Press, 2020, 48 (W1), pp.W177-W184. ⟨10.1093/nar/gkaa220⟩
Nucleic Acids Research, 2020, 48 (W1), pp.W177-W184. ⟨10.1093/nar/gkaa220⟩
Nucleic Acids Research, Oxford University Press, 2020, 48 (W1), pp.W177-W184. ⟨10.1093/nar/gkaa220⟩
The Galaxy HiCExplorer provides a web service at https://hicexplorer.usegalaxy.eu. It enables the integrative analysis of chromosome conformation by providing tools and computational resources to pre-process, analyse and visualize Hi-C, Capture Hi-C
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6e303b9936e8261e8c2254aa384c891b
https://hal.inrae.fr/hal-03141913/document
https://hal.inrae.fr/hal-03141913/document
Autor:
Lopez-Delisle, Lucille, Leily Rabbani, Wolff, Joachim, Bhardwaj, Vivek, Backofen, Rolf, Grüning, Björn, Ramı́rez, Fidel, Manke, Thomas
Data used for pyGenomeTracks publication, D. melanogaster dm3; cell type Kc167. chromatinStates_kc.bed: Van Bortle et al. 2014 CP190.bw: Wood et al. 2011 dm3_genes_compact_no_cg.bed: Ensembl version 78 H3K36me3.bw: The modENCODE Consortium 2010 HiC_C
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::292c617062f43a05b219b13bd6d4adf2
1AbstractMotivationNew DNA sequencing technologies have enabled the rapid analysis of many thousands of genomes from a single species. At the same time, the conventional approach of mapping sequencing reads against a single reference genome sequence
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7bdb8d548dde7b142ae72242ad2fa3c5
Autor:
Fabian Kilpert, Michael Rauer, Steffen Heyne, Vivek Bhardwaj, Thomas Manke, Leily Rabbani, Devon Ryan, Andreas S. Richter, Katarzyna Sikora
Publikováno v:
Bioinformatics
Summary Due to the rapidly increasing scale and diversity of epigenomic data, modular and scalable analysis workflows are of wide interest. Here we present snakePipes, a workflow package for processing and downstream analysis of data from common epig
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0cd1dee03eebd042c609f0e42d385080
https://pubmed.ncbi.nlm.nih.gov/31134269
https://pubmed.ncbi.nlm.nih.gov/31134269
Autor:
Bhardwaj, Michael Rauer, Katarzyna Sikora, Thomas Manke, Steffen Heyne, Andreas S. Richter, Fabian Kilpert, Devon Ryan, Leily Rabbani
The scale and diversity of epigenomics data has been rapidly increasing and ever more studies now present analyses of data from multiple epigenomic techniques. Performing such integrative analysis is time-consuming, especially for exploratory researc
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8aacffa95996c7544548fd7124b8c50b
https://doi.org/10.1101/407312
https://doi.org/10.1101/407312
Autor:
Vivek Bhardwaj, Thomas Manke, Rolf Backofen, Björn Grüning, Lucille Lopez-Delisle, Fidel Ramírez, Joachim Wolff, Leily Rabbani
Publikováno v:
Bioinformatics
Motivation Generating publication ready plots to display multiple genomic tracks can pose a serious challenge. Making desirable and accurate figures requires considerable effort. This is usually done by hand or using a vector graphic software. Result
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4f81a43b8b2b570c9c76c0e4d8e1b614
https://infoscience.epfl.ch/record/283670
https://infoscience.epfl.ch/record/283670