Zobrazeno 1 - 10
of 60
pro vyhledávání: '"Lee S, Katz"'
Autor:
Jessica C. Chen, Kane Patel, Peyton A. Smith, Eshaw Vidyaprakash, Caroline Snyder, Kaitlin A. Tagg, Hattie E. Webb, Morgan N. Schroeder, Lee S. Katz, Lori A. Rowe, Dakota Howard, Taylor Griswold, Rebecca L. Lindsey, Heather A. Carleton
Publikováno v:
Emerging Infectious Diseases, Vol 29, Iss 9, Pp 1895-1899 (2023)
Genomic characterization of an Escherichia coli O157:H7 strain linked to leafy greens–associated outbreaks dates its emergence to late 2015. One clade has notable accessory genomic content and a previously described mutation putatively associated w
Externí odkaz:
https://doaj.org/article/4e96a0ae1ad5462fb36afa6ecce04727
Autor:
Rebecca L. Lindsey, Lori M. Gladney, Andrew D. Huang, Taylor Griswold, Lee S. Katz, Blake A. Dinsmore, Monica S. Im, Zuzana Kucerova, Peyton A. Smith, Charlotte Lane, Heather A. Carleton
Publikováno v:
Frontiers in Microbiology, Vol 14 (2023)
Identification of enteric bacteria species by whole genome sequence (WGS) analysis requires a rapid and an easily standardized approach. We leveraged the principles of average nucleotide identity using MUMmer (ANIm) software, which calculates the per
Externí odkaz:
https://doaj.org/article/33951e9abafd4d4eaf5a36afd66bb894
Autor:
Lori M. Gladney, Taylor Griswold, Maryann Turnsek, Monica S. Im, Michele M. B. Parsons, Lee S. Katz, Cheryl L. Tarr, Christine C. Lee
Publikováno v:
Microbiology Spectrum, Vol 11, Iss 3 (2023)
ABSTRACT Toxigenic Vibrio cholerae serogroup O1 is the etiologic agent of the disease cholera, and strains of this serogroup are responsible for pandemics. A few other serogroups have been found to carry cholera toxin genes—most notably, O139, O75,
Externí odkaz:
https://doaj.org/article/26fc042ab42c407e8784680b7fee7c6f
Autor:
Lingzi Xiaoli, Jill V. Hagey, Daniel J. Park, Christopher A. Gulvik, Erin L. Young, Nabil-Fareed Alikhan, Adrian Lawsin, Norman Hassell, Kristen Knipe, Kelly F. Oakeson, Adam C. Retchless, Migun Shakya, Chien-Chi Lo, Patrick Chain, Andrew J. Page, Benjamin J. Metcalf, Michelle Su, Jessica Rowell, Eshaw Vidyaprakash, Clinton R. Paden, Andrew D. Huang, Dawn Roellig, Ketan Patel, Kathryn Winglee, Michael R. Weigand, Lee S. Katz
Publikováno v:
PeerJ, Vol 10, p e13821 (2022)
Background Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), the cause of coronavirus disease 2019 (COVID-19), has spread globally and is being surveilled with an international genome sequencing effort. Surveillance consists of sample acq
Externí odkaz:
https://doaj.org/article/033c7731831d472d8e1b1f2ae506a9c5
Autor:
Caroline Ochieng, Jessica C Chen, Mike Powel Osita, Lee S Katz, Taylor Griswold, Victor Omballa, Eric Ng'eno, Alice Ouma, Newton Wamola, Christine Opiyo, Loicer Achieng, Patrick K Munywoki, Rene S Hendriksen, Molly Freeman, Matthew Mikoleit, Bonventure Juma, Godfrey Bigogo, Eric Mintz, Jennifer R Verani, Elizabeth Hunsperger, Heather A Carleton
Publikováno v:
PLoS Neglected Tropical Diseases, Vol 16, Iss 8, p e0010704 (2022)
A high burden of Salmonella enterica subspecies enterica serovar Typhi (S. Typhi) bacteremia has been reported from urban informal settlements in sub-Saharan Africa, yet little is known about the introduction of these strains to the region. Understan
Externí odkaz:
https://doaj.org/article/9de29891710b4976854d140ed1485b5e
Publikováno v:
PeerJ, Vol 9, p e12446 (2021)
Background Whole genome sequencing (WGS) has gained increasing importance in responses to enteric bacterial outbreaks. Common analysis procedures for WGS, single nucleotide polymorphisms (SNPs) and genome assembly, are highly dependent upon WGS data
Externí odkaz:
https://doaj.org/article/ca440bb680684ba09abb720b0731d66d
Autor:
Julia C. Haston, Shanna Miko, Jennifer R. Cope, Haley McKeel, Cynney Walters, Lavin A. Joseph, Taylor Griswold, Lee S. Katz, Ashley A. Andújar, Laura Tourdot, Joshua Rounds, Paula Vagnone, Carlota Medus, JoAnn Harris, Robert Geist, Daniel Neises, Ashley Wiggington, Trey Smith, Monica S. Im, Courtney Wheeler, Peyton Smith, Heather A. Carleton, Christine C. Lee
Publikováno v:
MMWR. Morbidity and Mortality Weekly Report. 72:223-226
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::73238f020eb67a51a956145d83480f46
https://doi.org/10.15585/mmwr.mm7209a2
https://doi.org/10.15585/mmwr.mm7209a2
Autor:
Eric L. Stevens, Heather A. Carleton, Jennifer Beal, Glenn E. Tillman, Rebecca L. Lindsey, A.C. Lauer, Arthur Pightling, Karen G. Jarvis, Andrea Ottesen, Padmini Ramachandran, Leslie Hintz, Lee S. Katz, Jason P. Folster, Jean M. Whichard, Eija Trees, Ruth E. Timme, Patrick Mcdermott, Beverly Wolpert, Michael Bazaco, Shaohua Zhao, Sabina Lindley, Beau B. Bruce, Patricia M. Griffin, Eric Brown, Marc Allard, Sandra Tallent, Kari Irvin, Maria Hoffmann, Matt Wise, Robert Tauxe, Peter Gerner-Smidt, Mustafa Simmons, Bonnie Kissler, Stephanie Defibaugh-Chavez, William Klimke, Richa Agarwala, James Lindsay, Kimberly Cook, Suelee Robbe Austerman, David Goldman, Sherri Mcgarry, Kis Robertson Hale, Uday Dessai, Steven M. Musser, Chris Braden
Publikováno v:
Journal of Food Protection. 85:755-772
This multiagency report developed by the Interagency Collaboration for Genomics for Food and Feed Safety provides an overview of the use of and transition to whole genome sequencing (WGS) technology for detection and characterization of pathogens tra
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::59af78c3c211d2dd3d5c2a32806b172d
https://doi.org/10.4315/jfp-21-437
https://doi.org/10.4315/jfp-21-437
Autor:
Cynney Walters, Jessica Chen, Steven Stroika, Lee S. Katz, Maryann Turnsek, Valusnor Compère, Monica S. Im, Suzanna Gomez, Andre McCullough, Clarissa Landaverde, Jordan Putney, Hayat Caidi, Jason Folster, Heather A. Carleton, Jacques Boncy, Christine C. Lee
Publikováno v:
Journal of Clinical Microbiology. 61
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::1abaa9825ac4e4b55b0636c8703c6fd7
https://doi.org/10.1128/jcm.00142-23
https://doi.org/10.1128/jcm.00142-23
Publikováno v:
PLoS ONE, Vol 13, Iss 12, p e0208735 (2018)
Enterotoxigenic Escherichia coli (ETEC) are an important cause of diarrhea globally, particularly among children under the age of five in developing countries. ETEC O6 is the most common ETEC serogroup, yet the genome wide population structure of iso
Externí odkaz:
https://doaj.org/article/358be1b14af047c28729227e7e1359ee