Critical assessment of protein intrinsic disorder prediction

Autor: Necci, Marco, Piovesan, Damiano, Hoque Md, Tamjidul, Walsh, Ian, Iqbal, Sumaiya, Vendruscolo, Michele, Sormanni, Pietro, Wang, Chen, Raimondi, Daniele, Sharma, Ronesh, Zhou, Yaoqi, Litfin, Thomas, Galzitskaya Oxana, Valerianovna, Lobanov Michail, Yu, Vranken, Wim, Wallner, Björn, Mirabello, Claudio, Malhis, Nawar, Dosztányi, Zsuzsanna, Erdős, Gábor, Mészáros, Bálint, Gao, Jianzhao, Wang, Kui, Hu, Gang, Wu, Zhonghua, Sharma, Alok, Hanson, Jack, Paliwal, Kuldip, Callebaut, Isabelle, Bitard-Feildel, Tristan, Orlando, Gabriele, Peng, Zhenling, Xu, Jinbo, Wang, Sheng, Jones David, T., Cozzetto, Domenico, Meng, Fanchi, Yan, Jing, Gsponer, Jörg, Cheng, Jianlin, Wu, Tianqi, Kurgan, Lukasz, Promponas Vasilis, J., Tamana, Stella, Marino-Buslje, Cristina, Martínez-Pérez, Elizabeth, Chasapi, Anastasia, Ouzounis, Christos, Dunker A., Keith, Kajava Andrey, V., Leclercq Jeremy, Y., Aykac-Fas, Burcu, Lambrughi, Matteo, Maiani, Emiliano, Papaleo, Elena, Chemes Lucia, Beatriz, Álvarez, Lucía, González-Foutel Nicolás, S., Iglesias, Valentin, Pujols, Jordi, Ventura, Salvador, Palopoli, Nicolás, Benítez Guillermo, Ignacio, Parisi, Gustavo, Bassot, Claudio, Elofsson, Arne, Govindarajan, Sudha, Lamb, John, Salvatore, Marco, Hatos, András, Monzon Alexander, Miguel, Bevilacqua, Martina, Mičetić, Ivan, Minervini, Giovanni, Paladin, Lisanna, Quaglia, Federica, Leonardi, Emanuela, Davey, Norman, Horvath, Tamas, Kovacs Orsolya, Panna, Murvai, Nikoletta, Pancsa, Rita, Schad, Eva, Szabo, Beata, Tantos, Agnes, Macedo-Ribeiro, Sandra, Manso Jose, Antonio, Pereira Pedro José, Barbosa, Davidović, Radoslav, Veljkovic, Nevena, Hajdu-Soltész, Borbála, Pajkos, Mátyás, Szaniszló, Tamás, Guharoy, Mainak, Lazar, Tamas, Macossay-Castillo, Mauricio, Tompa, Peter, Tosatto Silvio C., E., Caid, Predictors, DisProt, Curators

Publikováno v: Nature Methods
Nature Methods, 2021, 18 (5), pp.472-481. ⟨10.1038/s41592-021-01117-3⟩
Nature Methods, Nature Publishing Group, 2021, ⟨10.1038/s41592-021-01117-3⟩
CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Nature Methods, 2021, ⟨10.1038/s41592-021-01117-3⟩
Dipòsit Digital de Documents de la UAB
Universitat Autònoma de Barcelona
Nature Methods, Nature Publishing Group, 2021, 18 (5), pp.472-481. ⟨10.1038/s41592-021-01117-3⟩

Intrinsically disordered proteins, defying the traditional protein structure–function paradigm, are a challenge to study experimentally. Because a large part of our knowledge rests on computational predictions, it is crucial that their accuracy is

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https://hal.sorbonne-universite.fr/hal-03329755/document

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DisProt: intrinsic protein disorder annotation in 2020.

Autor: Hatos A; Department of Biomedical Sciences, University of Padova, Padova 35121, Italy., Hajdu-Soltész B; MTA-ELTE Lendület Bioinformatics Research Group, Department of Biochemistry, Eötvös Loránd University, Budapest 1117, Hungary., Monzon AM; Department of Biomedical Sciences, University of Padova, Padova 35121, Italy., Palopoli N; Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes - CONICET, Bernal, Buenos Aires B1876BXD, Argentina., Álvarez L; Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones Biotecnológicas IIBIO, Universidad Nacional de San Martín, San Martín, Buenos Aires, Argentina., Aykac-Fas B; Computational Biology Laboratory, Danish Cancer Society Research Center, Copenhagen DK-2100, Denmark., Bassot C; Department of Biochemistry and Biophysics and Science for Life Laboratory, Stockholm University, Box 1031, Solna 17121, Sweden., Benítez GI; Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes - CONICET, Bernal, Buenos Aires B1876BXD, Argentina., Bevilacqua M; Department of Biomedical Sciences, University of Padova, Padova 35121, Italy., Chasapi A; Biological Computation & Process Laboratory, Chemical Process & Energy Resources Institute, Centre for Research & Technology Hellas, Thessalonica GR-57500, Greece., Chemes L; Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones Biotecnológicas IIBIO, Universidad Nacional de San Martín, San Martín, Buenos Aires, Argentina.; Departamento de Fisiología y Biología Molecular y Celular (DFBMC), Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, Argentina., Davey NE; Division of Cancer Biology, The Institute of Cancer Research, Chelsea, London SW3 6BJ, UK., Davidović R; Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences Vinca, University of Belgrade, Belgrade 11001, Serbia., Dunker AK; Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, IN 46202, USA., Elofsson A; Department of Biochemistry and Biophysics and Science for Life Laboratory, Stockholm University, Box 1031, Solna 17121, Sweden., Gobeill J; Swiss Institute of Bioinformatics and HES-SO \ HEG, Geneva 1200, Switzerland., Foutel NSG; Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones Biotecnológicas IIBIO, Universidad Nacional de San Martín, San Martín, Buenos Aires, Argentina., Sudha G; Department of Biochemistry and Biophysics and Science for Life Laboratory, Stockholm University, Box 1031, Solna 17121, Sweden., Guharoy M; Structural Biology Brussels, Vrije Universiteit Brussel (VUB), Brussels 1050, Belgium.; VIB-VUB Center for Structural Biology, Flanders Institute for Biotechnology (VIB), Brussels 1050, Belgium., Horvath T; Institute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Budapest H-1117, Hungary., Iglesias V; Departament de Bioquímica i Biologia Molecular and Institut de Biotecnologia i Biomedicina, Universitat Autònoma de Barcelona, Bellaterra 08193, Spain., Kajava AV; Centre de Recherche en Biologie cellulaire de Montpellier (CRBM), UMR 5237 CNRS, Université Montpellier, Montpellier 34293, France.; Institut de Biologie Computationnelle(IBC), Montpellier 34095, France., Kovacs OP; Institute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Budapest H-1117, Hungary., Lamb J; Department of Biochemistry and Biophysics and Science for Life Laboratory, Stockholm University, Box 1031, Solna 17121, Sweden., Lambrughi M; Computational Biology Laboratory, Danish Cancer Society Research Center, Copenhagen DK-2100, Denmark., Lazar T; Structural Biology Brussels, Vrije Universiteit Brussel (VUB), Brussels 1050, Belgium.; VIB-VUB Center for Structural Biology, Flanders Institute for Biotechnology (VIB), Brussels 1050, Belgium., Leclercq JY; Centre de Recherche en Biologie cellulaire de Montpellier (CRBM), UMR 5237 CNRS, Université Montpellier, Montpellier 34293, France., Leonardi E; Department of Woman and Child Health, University of Padova, Padova 35127, Italy.; Fondazione Istituto di Ricerca Pediatrica (IRP), Città della Speranza, Padova 35127, Italy., Macedo-Ribeiro S; Instituto de Biologia Molecular e Celular (IBMC) and Instituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto 4200-135, Portugal., Macossay-Castillo M; Structural Biology Brussels, Vrije Universiteit Brussel (VUB), Brussels 1050, Belgium.; VIB-VUB Center for Structural Biology, Flanders Institute for Biotechnology (VIB), Brussels 1050, Belgium., Maiani E; Computational Biology Laboratory, Danish Cancer Society Research Center, Copenhagen DK-2100, Denmark., Manso JA; Instituto de Biologia Molecular e Celular (IBMC) and Instituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto 4200-135, Portugal., Marino-Buslje C; Bioinformatics Unit. Fundación Instituto Leloir, Ciudad de Buenos Aires C1405BWE, Argentina., Martínez-Pérez E; Bioinformatics Unit. Fundación Instituto Leloir, Ciudad de Buenos Aires C1405BWE, Argentina., Mészáros B; MTA-ELTE Lendület Bioinformatics Research Group, Department of Biochemistry, Eötvös Loránd University, Budapest 1117, Hungary., Mičetić I; Department of Biomedical Sciences, University of Padova, Padova 35121, Italy., Minervini G; Department of Biomedical Sciences, University of Padova, Padova 35121, Italy., Murvai N; Institute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Budapest H-1117, Hungary., Necci M; Department of Biomedical Sciences, University of Padova, Padova 35121, Italy., Ouzounis CA; Biological Computation & Process Laboratory, Chemical Process & Energy Resources Institute, Centre for Research & Technology Hellas, Thessalonica GR-57500, Greece., Pajkos M; MTA-ELTE Lendület Bioinformatics Research Group, Department of Biochemistry, Eötvös Loránd University, Budapest 1117, Hungary., Paladin L; Department of Biomedical Sciences, University of Padova, Padova 35121, Italy., Pancsa R; Institute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Budapest H-1117, Hungary., Papaleo E; Computational Biology Laboratory, Danish Cancer Society Research Center, Copenhagen DK-2100, Denmark.; Translational Disease Systems Biology, Faculty of Health and Medical Sciences, Novo Nordisk Foundation Center for Protein Research University of Copenhagen, Copenhagen DK-2200, Denmark., Parisi G; Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes - CONICET, Bernal, Buenos Aires B1876BXD, Argentina., Pasche E; Swiss Institute of Bioinformatics and HES-SO \ HEG, Geneva 1200, Switzerland., Barbosa Pereira PJ; Instituto de Biologia Molecular e Celular (IBMC) and Instituto de Investigação e Inovação em Saúde (i3S), Universidade do Porto, Porto 4200-135, Portugal., Promponas VJ; Bioinformatics Research Laboratory, Department of Biological Sciences, University of Cyprus, Nicosia, CY 1678, Cyprus., Pujols J; Departament de Bioquímica i Biologia Molecular and Institut de Biotecnologia i Biomedicina, Universitat Autònoma de Barcelona, Bellaterra 08193, Spain., Quaglia F; Department of Biomedical Sciences, University of Padova, Padova 35121, Italy., Ruch P; Swiss Institute of Bioinformatics and HES-SO \ HEG, Geneva 1200, Switzerland., Salvatore M; Department of Biochemistry and Biophysics and Science for Life Laboratory, Stockholm University, Box 1031, Solna 17121, Sweden., Schad E; Institute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Budapest H-1117, Hungary., Szabo B; Institute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Budapest H-1117, Hungary., Szaniszló T; MTA-ELTE Lendület Bioinformatics Research Group, Department of Biochemistry, Eötvös Loránd University, Budapest 1117, Hungary., Tamana S; Bioinformatics Research Laboratory, Department of Biological Sciences, University of Cyprus, Nicosia, CY 1678, Cyprus., Tantos A; Institute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Budapest H-1117, Hungary., Veljkovic N; Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences Vinca, University of Belgrade, Belgrade 11001, Serbia., Ventura S; Departament de Bioquímica i Biologia Molecular and Institut de Biotecnologia i Biomedicina, Universitat Autònoma de Barcelona, Bellaterra 08193, Spain., Vranken W; Structural Biology Brussels, Vrije Universiteit Brussel (VUB), Brussels 1050, Belgium.; VIB-VUB Center for Structural Biology, Flanders Institute for Biotechnology (VIB), Brussels 1050, Belgium.; Interuniversity Institute of Bioinformatics in Brussels (IB2), ULB-VUB, Brussels 1050, Belgium., Dosztányi Z; MTA-ELTE Lendület Bioinformatics Research Group, Department of Biochemistry, Eötvös Loránd University, Budapest 1117, Hungary., Tompa P; Structural Biology Brussels, Vrije Universiteit Brussel (VUB), Brussels 1050, Belgium.; VIB-VUB Center for Structural Biology, Flanders Institute for Biotechnology (VIB), Brussels 1050, Belgium.; Institute of Enzymology, Research Centre for Natural Sciences, Hungarian Academy of Sciences, Budapest H-1117, Hungary., Tosatto SCE; Department of Biomedical Sciences, University of Padova, Padova 35121, Italy.; CNR Institute of Neurosceince, Padova 35121, Italy., Piovesan D; Department of Biomedical Sciences, University of Padova, Padova 35121, Italy.

Publikováno v: Nucleic acids research [Nucleic Acids Res] 2020 Jan 08; Vol. 48 (D1), pp. D269-D276.