Zobrazeno 1 - 10
of 183
pro vyhledávání: '"Leaver-Fay A"'
Autor:
Julia Koehler Leman, Sergey Lyskov, Steven M. Lewis, Jared Adolf-Bryfogle, Rebecca F. Alford, Kyle Barlow, Ziv Ben-Aharon, Daniel Farrell, Jason Fell, William A. Hansen, Ameya Harmalkar, Jeliazko Jeliazkov, Georg Kuenze, Justyna D. Krys, Ajasja Ljubetič, Amanda L. Loshbaugh, Jack Maguire, Rocco Moretti, Vikram Khipple Mulligan, Morgan L. Nance, Phuong T. Nguyen, Shane Ó Conchúir, Shourya S. Roy Burman, Rituparna Samanta, Shannon T. Smith, Frank Teets, Johanna K. S. Tiemann, Andrew Watkins, Hope Woods, Brahm J. Yachnin, Christopher D. Bahl, Chris Bailey-Kellogg, David Baker, Rhiju Das, Frank DiMaio, Sagar D. Khare, Tanja Kortemme, Jason W. Labonte, Kresten Lindorff-Larsen, Jens Meiler, William Schief, Ora Schueler-Furman, Justin B. Siegel, Amelie Stein, Vladimir Yarov-Yarovoy, Brian Kuhlman, Andrew Leaver-Fay, Dominik Gront, Jeffrey J. Gray, Richard Bonneau
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Computational methods are becoming an increasingly important part of biological research. Using the Rosetta framework as an example, the authors demonstrate how community-driven development of computational methods can be done in a reproducible and r
Externí odkaz:
https://doaj.org/article/7ccba8c202cd473d906c246ef7b2eb77
Autor:
Julia Koehler Leman, Brian D Weitzner, P Douglas Renfrew, Steven M Lewis, Rocco Moretti, Andrew M Watkins, Vikram Khipple Mulligan, Sergey Lyskov, Jared Adolf-Bryfogle, Jason W Labonte, Justyna Krys, RosettaCommons Consortium, Christopher Bystroff, William Schief, Dominik Gront, Ora Schueler-Furman, David Baker, Philip Bradley, Roland Dunbrack, Tanja Kortemme, Andrew Leaver-Fay, Charlie E M Strauss, Jens Meiler, Brian Kuhlman, Jeffrey J Gray, Richard Bonneau
Publikováno v:
PLoS Computational Biology, Vol 16, Iss 5, p e1007507 (2020)
Many scientific disciplines rely on computational methods for data analysis, model generation, and prediction. Implementing these methods is often accomplished by researchers with domain expertise but without formal training in software engineering o
Externí odkaz:
https://doaj.org/article/39b3fd5bfd834abfb5347fc6af6789bc
Akademický článek
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Publikováno v:
AIMS Biophysics, Vol 3, Iss 1, Pp 1-26 (2015)
Membrane proteins make up approximately one third of all proteins, and they play key roles in a plethora of physiological processes. However, membrane proteins make up less than 2% of experimentally determined structures, despite significant advances
Externí odkaz:
https://doaj.org/article/5029e6a8aead46259863f1fd47f3ee14
Autor:
Jae Hyeon Lee, Payman Yadollahpour, Andrew Watkins, Nathan C. Frey, Andrew Leaver-Fay, Stephen Ra, Kyunghyun Cho, Vladimir Gligorijević, Aviv Regev, Richard Bonneau
Designing proteins to achieve specific functions often requiresin silicomodeling of their properties at high throughput scale and can significantly benefit from fast and accurate protein structure prediction. We introduce EquiFold, a new end-to-end d
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::4a32b8dd8fe5f25e332bdd3fa687e65f
https://doi.org/10.1101/2022.10.07.511322
https://doi.org/10.1101/2022.10.07.511322
Autor:
David F. Thieker, Jack B. Maguire, Stephan T. Kudlacek, Andrew Leaver‐Fay, Sergey Lyskov, Brian Kuhlman
Publikováno v:
Protein Science. 31
Many proteins have low thermodynamic stability, which can lead to low expression yields and limit functionality in research, industrial and clinical settings. This article introduces two, web-based tools that use the high-resolution structure of a pr
Publikováno v:
PLoS Computational Biology, Vol 13, Iss 12, p e1005837 (2017)
Computational biology is an interdisciplinary field, and many computational biology research projects involve distributed teams of scientists. To accomplish their work, these teams must overcome both disciplinary and geographic barriers. Introducing
Externí odkaz:
https://doaj.org/article/079812d0d194498b872444e505026cf3
Autor:
Morgan L. Nance, Steven J. Bertolani, William R. Schief, Rebecca F. Alford, Daniel W. Kulp, Jason C. Klima, Shourya S. Roy Burman, Yuanhan Wu, Jack Maguire, Jordan R. Willis, Roland L. Dunbrack, Andrew Leaver-Fay, Jason W. Labonte, Aleexsan Adal, Ramya Rangan, Brian Kuhlman, Sergey Lyskov, Jared Adolf-Bryfogle, Justin B. Siegel, Kathy H. Le, Rhiju Das, Jeffrey J. Gray, Brian D. Weitzner, Matt A. Adrianowycz
Publikováno v:
Biophysicist (Rockv)
Biomolecular structure drives function, and computational capabilities have progressed such that the prediction and computational design of biomolecular structures is increasingly feasible. Because computational biophysics attracts students from many
Autor:
Katherine I. Albanese, Andrew Leaver-Fay, Joseph W. Treacy, Rodney Park, K. N. Houk, Brian Kuhlman, Marcey L. Waters
Publikováno v:
J Am Chem Soc
Journal of the American Chemical Society, vol 144, iss 6
Journal of the American Chemical Society, vol 144, iss 6
We report the measurement and analysis of sulfonium-π, thioether-π, and ammonium-π interactions in a β-hairpin peptide model system, coupled with computational investigation and PDB analysis. These studies indicated that the sulfonium-π interact
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1e451ca29c931ecec92d6129866fb083
https://europepmc.org/articles/PMC8923077/
https://europepmc.org/articles/PMC8923077/
Akademický článek
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