Zobrazeno 1 - 10
of 44
pro vyhledávání: '"Le, Si Quang"'
Autor:
Le, Si Quang, Gascuel, Olivier
Publikováno v:
Systematic Biology, 2010 May 01. 59(3), 277-287.
Externí odkaz:
https://www.jstor.org/stable/25677583
Publikováno v:
Philosophical Transactions: Biological Sciences, 2008 Dec . 363(1512), 3965-3976.
Externí odkaz:
https://www.jstor.org/stable/20208854
Autor:
Nguyen Dai Thanh, Pham Bao Son, Le Si Quang, Nguyen Huu Duc, Phan Thi Thu Hang, Do Duc Dong, Le Sy Vinh, Bui Quang Minh, Dang Cao Cuong, Pham Thi Minh Trang, Dang Thanh Hai, Hoang Kim Phuc
Publikováno v:
Journal of Biosciences. 40:113-124
We here present the first whole genome analysis of an anonymous Kinh Vietnamese (KHV) trio whose genomes were deeply sequenced to 30-fold average coverage. The resulting short reads covered 99.91 percent of the human reference genome (GRCh37d5). We i
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::47be7e282cf45c1a653159e2d80b78c1
https://doi.org/10.1007/s12038-015-9501-0
https://doi.org/10.1007/s12038-015-9501-0
Autor:
Pham Bao Son, Nguyen Ha Anh Tuan, Dang Thanh Hai, Le Si Quang, Dao Quang Minh, Bui Quang Minh, Nguyen Dai Thanh, Pham Thi Minh Trang, Le Sy Vinh
Publikováno v:
KSE
The human reference genome is an essential tool for studying human genomes. The standard reference genome is constructed from genomes of a few donors. The 1000 genomes project has revealed a huge amount of genetic differences between diverse populati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f2e2f0c021c6caa5237af9f7ce05c048
https://doi.org/10.1109/kse.2015.49
https://doi.org/10.1109/kse.2015.49
Publikováno v:
KSE
Amino acid substitution models (matrices) play important role for protein phylogenetics analysis and protein sequence alignment. Different approaches have been proposed to estimate amino acid substitution matrices since the time of Day Hoff in 1972.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::c2aae9ad967f0635518961c530479581
https://doi.org/10.1109/kse.2011.21
https://doi.org/10.1109/kse.2011.21
Publikováno v:
KSE
The amino acid substitution model (matrix) is a crucial part of protein sequence analysis systems. General amino acid substitution models have been estimated from large protein databases, however, they are not specific for influenza viruses. In previ
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::139401a656476ea9f1eee66c3311df09
https://doi.org/10.1109/kse.2011.23
https://doi.org/10.1109/kse.2011.23
Publikováno v:
2009 International Conference on Knowledge and Systems Engineering.
Amino acid substitution model is a crucial component in protein sequence comparative systems such as protein sequence similarity searching, protein sequence alignment, and protein phylogenetic analysis. Although several general amino acid substitutio
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::6900db11747b72e495f37c1153ecd9b3
https://doi.org/10.1109/kse.2009.27
https://doi.org/10.1109/kse.2009.27
Publikováno v:
Bioinformatics
Bioinformatics, Oxford University Press (OUP), 2008, 29, pp.2317-2323
Bioinformatics, Oxford University Press (OUP), 2008, 29, pp.2317-2323
Motivation: Previous studies have shown that accounting for site-specific amino acid replacement patterns using mixtures of stationary probability profiles offers a promising approach for improving the robustness of phylogenetic reconstructions in th
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::27f426e28b78f2f38a519785863bc38e
https://pubmed.ncbi.nlm.nih.gov/18718941
https://pubmed.ncbi.nlm.nih.gov/18718941
Autor:
Le Si, Quang, Gascuel, Olivier
Publikováno v:
Molecular Biology and Evolution
Molecular Biology and Evolution, Oxford University Press (OUP), 2008, 25 (7), pp.1307-1320
Molecular Biology and Evolution, Oxford University Press (OUP), 2008, 25 (7), pp.1307-1320
International audience; Amino acid replacement matrices are an essential basis of protein phylogenetics. They are used to compute substitution probabilities along phylogeny branches and thus the likelihood of the data. They are also essential in prot
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::34508b9d516a038c57fd6f63e7621360
https://hal-lirmm.ccsd.cnrs.fr/lirmm-00324106v2/document
https://hal-lirmm.ccsd.cnrs.fr/lirmm-00324106v2/document
Autor:
Le Si, Quang, Gascuel, Olivier
Publikováno v:
The Annual New Zealand Phylogenetics Meeting
The Annual New Zealand Phylogenetics Meeting, Feb 2007, Mount Ruapehu, New Zealand, New Zealand
The Annual New Zealand Phylogenetics Meeting, Feb 2007, Mount Ruapehu, New Zealand, New Zealand
It has been recognized for a long time that substitution processes vary depending on structural configurations. However, this information is not (or rarely) used in phylogenetic studies, even though the structure of dozen thousands of proteins has be
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::a1c58f6308069fc261f16ed839d80a83
https://hal-lirmm.ccsd.cnrs.fr/lirmm-00195966
https://hal-lirmm.ccsd.cnrs.fr/lirmm-00195966