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GATB: Toolbox for developing efficient NGS software

Autor: Drezen, Erwan, Rizk, G, Chikhi, R, Deltel, Charles, Lemaitre, C, Peterlongo, P, Lavenier, D

Publikováno v: 9th Brazilian Symposium on Bioinformatics, BSB 2014
9th Brazilian Symposium on Bioinformatics, BSB 2014, Oct 2014, Belo Honrizonte, Brazil

International audience; The analysis of NGS data remains a time and space-consuming task. Many efforts have been made to provide efficient data structures for indexing the terabytes of data generated by the fast sequencing machines (Suffix Array, Bur

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::3ee268cc4c9b006d5ad96fe58aaa6cc5
https://hal.archives-ouvertes.fr/hal-01088828/document

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Genome sequence of the pea aphid Acyrthosiphon pisum

Autor: Richards, S, Gibbs, RA, Gerardo, NM, Moran, N, Nakabachi, A, Stern, D, Tagu, D, Wilson, ACC, Muzny, D, Kovar, C, Cree, A, Chacko, J, Chandrabose, MN, Dao, MD, Dinh, HH, Gabisi, RA, Hines, S, Hume, J, Jhangian, SN, Joshi, V, Lewis, LR, Liu, Y-S, Lopez, J, Morgan, MB, Nguyen, NB, Okwuonu, GO, Ruiz, SJ, Santibanez, J, Wright, RA, Fowler, GR, Hitchens, ME, Lozado, RJ, Moen, C, Steffen, D, Warren, JT, Zhang, J, Nazareth, LV, Chavez, D, Davis, C, Lee, SL, Patel, BM, Pu, L-L, Bell, SN, Johnson, AJ, Vattathil, S, Jr, WRL, Shigenobu, S, Dang, PM, Morioka, M, Fukatsu, T, Kudo, T, Miyagishima, S-Y, Jiang, H, Worley, KC, Legeai, F, Gauthier, J-P, Collin, O, Zhang, L, Chen, H-C, Ermolaeva, O, Hlavina, W, Kapustin, Y, Kiryutin, B, Kitts, P, Maglott, D, Murphy, T, Pruitt, K, Sapojnikov, V, Souvorov, A, Thibaud-Nissen, F, Camara, F, Guigo, R, Stanke, M, Solovyev, V, Kosarev, P, Gilbert, D, Gabaldon, T, Huerta-Cepas, J, Marcet-Houben, M, Pignatelli, M, Moya, A, Rispe, C, Ollivier, M, Quesneville, H, Permal, E, Llorens, C, Futami, R, Hedges, D, Robertson, HM, Alioto, T, Mariotti, M, Nikoh, N, McCutcheon, JP, Burke, G, Kamins, A, Latorre, A, Moran, NA, Ashton, P, Calevro, F, Charles, H, Colella, S, Douglas, A, Jander, G, Jones, DH, Febvay, G, Kamphuis, LG, Kushlan, PF, Macdonald, S, Ramsey, J, Schwartz, J, Seah, S, Thomas, G, Vellozo, A, Cass, B, Degnan, P, Hurwitz, B, Leonardo, T, Koga, R, Altincicek, B, Anselme, C, Atamian, H, Barribeau, SM, de Vos, M, Duncan, EJ, Evans, J, Ghanim, M, Heddi, A, Kaloshian, I, Vincent-Monegat, C, Parker, BJ, Perez-Brocal, V, Rahbe, Y, Spragg, CJ, Tamames, J, Tamarit, D, Tamborindeguy, C, Vilcinskas, A, Bickel, RD, Brisson, JA, Butts, T, Chang, C-C, Christiaens, O, Davis, GK, Duncan, E, Ferrier, D, Iga, M, Janssen, R, Lu, H-L, McGregor, A, Miura, T, Smagghe, G, Smith, J, van der Zee, M, Velarde, R, Wilson, M, Dearden, P, Edwards, OR, Gordon, K, Hilgarth, RS, Jr, RSD, Srinivasan, D, Walsh, TK, Ishikawa, A, Jaubert-Possamai, S, Fenton, B, Huang, W, Rizk, G, Lavenier, D, Nicolas, J, Smadja, C, Zhou, J-J, Vieira, FG, He, X-L, Liu, R, Rozas, J, Field, LM, Ashton, PD, Campbell, P, Carolan, JC, Douglas, AE, Fitzroy, CIJ, Reardon, KT, Reeck, GR, Singh, K, Wilkinson, TL, Huybrechts, J, Abdel-latief, M, Robichon, A, Veenstra, JA, Hauser, F, Cazzamali, G, Schneider, M, Williamson, M, Stafflinger, E, Hansen, KK, Grimmelikhuijzen, CJP, Price, DRG, Caillaud, M, van Fleet, E, Ren, Q, Gatehouse, JA, Brault, V, Monsion, B, Diaz, J, Hunnicutt, L, Ju, H-J, Pechuan, X, Aguilar, J, Cortes, T, Ortiz-Rivas, B, Martinez-Torres, D, Dombrovsky, A, Dale, RP, Davies, TGE, Williamson, MS, Jones, A, Sattelle, D, Williamson, S, Wolstenholme, A, Cottret, L, Sagot, MF, Heckel, DG, Hunter, W, Consortium, IAG

Publikováno v: Richards, S, Gibbs, R A, Gerardo, N M, Grimmelikhuijzen, C & International Aphid Genomics Consortium 2010, ' Genome sequence of the pea aphid Acyrthosiphon pisum ', P L o S Biology, vol. 8, no. 2, pp. e1000313 . https://doi.org/10.1371/journal.pbio.1000313
Recercat. Dipósit de la Recerca de Catalunya
instname
PLoS Biology, 8 (2)
PLoS Biology
PLoS Biology, 2010, 8 (2), pp.e1000313. ⟨10.1371/journal.pbio.1000313⟩
PLoS biology, vol 8, iss 2
PLoS biology, 2010, Vol.8(2), pp.e1000313 [Peer Reviewed Journal]
PLoS Biology, Vol 8, Iss 2, p e1000313 (2010)
PLOS BIOLOGY
r-FISABIO: Repositorio Institucional de Producción Científica
Fundación para el Fomento de la Investigación Sanitaria y Biomédica de la Comunitat Valenciana (FISABIO)
PLoS Biology, Public Library of Science, 2010, 8 (2), pp.e1000313. ⟨10.1371/journal.pbio.1000313⟩
Plos Biology 2 (8), . (2010)
Dipòsit Digital de la UB
Universidad de Barcelona
r-FISABIO. Repositorio Institucional de Producción Científica
PloS Biology, 8(2)
PloS Biology 8 (2010) 2

The genome of the pea aphid shows remarkable levels of gene duplication and equally remarkable gene absences that shed light on aspects of aphid biology, most especially its symbiosis with Buchnera.
Aphids are important agricultural pests and al

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0d9cf99dde78b065f2e35cbcf8ec6462
https://curis.ku.dk/ws/files/44137312/Genome_Sequence_of_the_Pea_Aphid.pdf

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