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pro vyhledávání: '"Lavenier, Dominique"'
Autor:
Lavenier, Dominique
The paper describes an algorithm to compute a consensus sequence from a set of DNA sequences of approximatively identical length generated by 3rd sequencing generation technologies. Its purpose targets DNA storage and is guided by specific features t
Externí odkaz:
http://arxiv.org/abs/2105.04993
Discriminative pattern mining is an essential task of data mining. This task aims to discover patterns which occur more frequently in a class than other classes in a class-labeled dataset. This type of patterns is valuable in various domains such as
Externí odkaz:
http://arxiv.org/abs/1906.01581
Akademický článek
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Autor:
Benoit, Gaëtan, Peterlongo, Pierre, Mariadassou, Mahendra, Drezen, Erwan, Schbath, Sophie, Lavenier, Dominique, Lemaitre, Claire
Background. Large scale metagenomic projects aim to extract biodiversity knowledge between different environmental conditions. Current methods for comparing microbial communities face important limitations. Those based on taxonomical or functional as
Externí odkaz:
http://arxiv.org/abs/1604.02412
Motivation: Data volumes generated by next-generation sequencing technolo- gies is now a major concern, both for storage and transmission. This triggered the need for more efficient methods than general purpose compression tools, such as the widely u
Externí odkaz:
http://arxiv.org/abs/1412.5932
Autor:
Bradnam, Keith R., Fass, Joseph N., Alexandrov, Anton, Baranay, Paul, Bechner, Michael, Birol, İnanç, Boisvert, Sébastien, Chapman, Jarrod A., Chapuis, Guillaume, Chikhi, Rayan, Chitsaz, Hamidreza, Chou, Wen-Chi, Corbeil, Jacques, Del Fabbro, Cristian, Docking, T. Roderick, Durbin, Richard, Earl, Dent, Emrich, Scott, Fedotov, Pavel, Fonseca, Nuno A., Ganapathy, Ganeshkumar, Gibbs, Richard A., Gnerre, Sante, Godzaridis, Élénie, Goldstein, Steve, Haimel, Matthias, Hall, Giles, Haussler, David, Hiatt, Joseph B., Ho, Isaac Y., Howard, Jason, Hunt, Martin, Jackman, Shaun D., Jaffe, David B, Jarvis, Erich, Jiang, Huaiyang, Kazakov, Sergey, Kersey, Paul J., Kitzman, Jacob O., Knight, James R., Koren, Sergey, Lam, Tak-Wah, Lavenier, Dominique, Laviolette, François, Li, Yingrui, Li, Zhenyu, Liu, Binghang, Liu, Yue, Luo, Ruibang, MacCallum, Iain, MacManes, Matthew D, Maillet, Nicolas, Melnikov, Sergey, Vieira, Bruno Miguel, Naquin, Delphine, Ning, Zemin, Otto, Thomas D., Paten, Benedict, Paulo, Octávio S., Phillippy, Adam M., Pina-Martins, Francisco, Place, Michael, Przybylski, Dariusz, Qin, Xiang, Qu, Carson, Ribeiro, Filipe J, Richards, Stephen, Rokhsar, Daniel S., Ruby, J. Graham, Scalabrin, Simone, Schatz, Michael C., Schwartz, David C., Sergushichev, Alexey, Sharpe, Ted, Shaw, Timothy I., Shendure, Jay, Shi, Yujian, Simpson, Jared T., Song, Henry, Tsarev, Fedor, Vezzi, Francesco, Vicedomini, Riccardo, Wang, Jun, Worley, Kim C., Yin, Shuangye, Yiu, Siu-Ming, Yuan, Jianying, Zhang, Guojie, Zhang, Hao, Zhou, Shiguo, Korf, Ian F.
Publikováno v:
GigaScience 2:10 (2013)
Background - The process of generating raw genome sequence data continues to become cheaper, faster, and more accurate. However, assembly of such data into high-quality, finished genome sequences remains challenging. Many genome assembly tools are av
Externí odkaz:
http://arxiv.org/abs/1301.5406
Autor:
Lavenier, Dominique
Publikováno v:
Accès au texte intégral.
Habilitation à diriger des recherches : Informatique : Rennes 1 : 1997.
Bibliogr. p.61-69.
Bibliogr. p.61-69.
Autor:
Leblanc, Julien, Boulle, Olivier, Roux, Emeline, Nicolas, Jacques, Lavenier, Dominique, Audic, Yann
Publikováno v:
Biotechniques; May 2024, Vol. 76 Issue: 5 p207-219, 13p
Autor:
Nguyen, Van Hoa, Lavenier, Dominique
This report presents the implementation of a protein sequence comparison algorithm specifically designed for speeding up time consuming part on parallel hardware such as SSE instructions, multicore architectures or graphic boards. Three programs have
Externí odkaz:
http://arxiv.org/abs/0804.3643
Autor:
Faure, Roland1 roland.faure@irisa.fr, Lavenier, Dominique1
Publikováno v:
Bioinformatics Advances. 2022, Vol. 2 Issue 1, p1-7. 7p.