Global Spore Sampling Project: A global, standardized dataset of airborne fungal DNA

Autor: Otso Ovaskainen, Nerea Abrego, Brendan Furneaux, Bess Hardwick, Panu Somervuo, Isabella Palorinne, Nigel R. Andrew, Ulyana V. Babiy, Tan Bao, Gisela Bazzano, Svetlana N. Bondarchuk, Timothy C. Bonebrake, Georgina L. Brennan, Syndonia Bret-Harte, Claus Bässler, Luciano Cagnolo, Erin K. Cameron, Elodie Chapurlat, Simon Creer, Luigi P. D’Acqui, Natasha de Vere, Marie-Laure Desprez-Loustau, Michel A. K. Dongmo, Ida B. Dyrholm Jacobsen, Brian L. Fisher, Miguel Flores de Jesus, Gregory S. Gilbert, Gareth W. Griffith, Anna A. Gritsuk, Andrin Gross, Håkan Grudd, Panu Halme, Rachid Hanna, Jannik Hansen, Lars Holst Hansen, Apollon D. M. T. Hegbe, Sarah Hill, Ian D. Hogg, Jenni Hultman, Kevin D. Hyde, Nicole A. Hynson, Natalia Ivanova, Petteri Karisto, Deirdre Kerdraon, Anastasia Knorre, Irmgard Krisai-Greilhuber, Juri Kurhinen, Masha Kuzmina, Nicolas Lecomte, Erin Lecomte, Viviana Loaiza, Erik Lundin, Alexander Meire, Armin Mešić, Otto Miettinen, Norman Monkhause, Peter Mortimer, Jörg Müller, R. Henrik Nilsson, Puani Yannick C. Nonti, Jenni Nordén, Björn Nordén, Claudia Paz, Petri Pellikka, Danilo Pereira, Geoff Petch, Juha-Matti Pitkänen, Flavius Popa, Caitlin Potter, Jenna Purhonen, Sanna Pätsi, Abdullah Rafiq, Dimby Raharinjanahary, Niklas Rakos, Achala R. Rathnayaka, Katrine Raundrup, Yury A. Rebriev, Jouko Rikkinen, Hanna M. K. Rogers, Andrey Rogovsky, Yuri Rozhkov, Kadri Runnel, Annika Saarto, Anton Savchenko, Markus Schlegel, Niels Martin Schmidt, Sebastian Seibold, Carsten Skjøth, Elisa Stengel, Svetlana V. Sutyrina, Ilkka Syvänperä, Leho Tedersoo, Jebidiah Timm, Laura Tipton, Hirokazu Toju, Maria Uscka-Perzanowska, Michelle van der Bank, F. Herman van der Bank, Bryan Vandenbrink, Stefano Ventura, Solvi R. Vignisson, Xiaoyang Wang, Wolfgang W. Weisser, Subodini N. Wijesinghe, S. Joseph Wright, Chunyan Yang, Nourou S. Yorou, Amanda Young, Douglas W. Yu, Evgeny V. Zakharov, Paul D. N. Hebert, Tomas Roslin

Publikováno v: Scientific Data, Vol 11, Iss 1, Pp 1-17 (2024)

Abstract Novel methods for sampling and characterizing biodiversity hold great promise for re-evaluating patterns of life across the planet. The sampling of airborne spores with a cyclone sampler, and the sequencing of their DNA, have been suggested

Externí odkaz: https://doaj.org/article/a665cd3f632448dbad13496c3a4720f6

Measuring associations between the microbiota and repeated measures of continuous clinical variables using a lasso-penalized generalized linear mixed model

Autor: Laura Tipton, Karen T. Cuenco, Laurence Huang, Ruth M. Greenblatt, Eric Kleerup, Frank Sciurba, Steven R. Duncan, Michael P. Donahoe, Alison Morris, Elodie Ghedin

Publikováno v: BioData Mining, Vol 11, Iss 1, Pp 1-20 (2018)

Abstract Background Human microbiome studies in clinical settings generally focus on distinguishing the microbiota in health from that in disease at a specific point in time. However, microbiome samples may be associated with disease severity or cont

Externí odkaz: https://doaj.org/article/74cf210f49214dd8b833af30a0a308d6

A Developing Symbiosis: Enabling Cross-Talk Between Ecologists and Microbiome Scientists

Autor: Laura Tipton, John L. Darcy, Nicole A. Hynson

Publikováno v: Frontiers in Microbiology, Vol 10 (2019)

Like all interactions, the success of cross-discipline collaborations relies on effective communication. Ecology offers theoretical frameworks and lexicons to study microbiomes. Yet some of the terms and concepts borrowed from ecology are being used

Externí odkaz: https://doaj.org/article/8fbb9d6ae0fc48be8ae4f1b3e2ac1c49

Fungal aerobiota are not affected by time nor environment over a 13-y time series at the Mauna Loa Observatory

Autor: Patrick J. Sheridan, Anthony S. Amend, Erin M. Datlof, Stephanie N. Kivlin, Laura Tipton, Nicole A. Hynson, Geoffrey Zahn

Publikováno v: Proceedings of the National Academy of Sciences of the United States of America

Significance Although fungi in the air make up a disproportionately large part of particulate matter and affect both local and global biogeochemical cycles, the factors influencing their composition and diversity are less clear, especially over relat

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0fce815d3b9a20809dea13a05ab669bd
http://europepmc.org/articles/PMC6926071

Hawaiian Fungal Amplicon Sequence Variants Reveal Otherwise Hidden Biogeography

Autor: Laura, Tipton, Geoffrey L, Zahn, John L, Darcy, Anthony S, Amend, Nicole A, Hynson

Publikováno v: Microbial ecology. 83(1)

To study biogeography and other ecological patterns of microorganisms, including fungi, scientists have been using operational taxonomic units (OTUs) as representations of species or species hypotheses. However, when defined by 97% sequence similarit

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=pmid________::827c330b74db9c3359c1ee8ce18c2216
https://pubmed.ncbi.nlm.nih.gov/33742230