Pathogen surveillance in the informal settlement, Kibera, Kenya, using a metagenomics approach.

Autor: Rene S Hendriksen, Oksana Lukjancenko, Patrick Munk, Mathis H Hjelmsø, Jennifer R Verani, Eric Ng'eno, Godfrey Bigogo, Samuel Kiplangat, Traoré Oumar, Lasse Bergmark, Timo Röder, John C Neatherlin, Onyango Clayton, Tine Hald, Susanne Karlsmose, Sünje J Pamp, Barry Fields, Joel M Montgomery, Frank M Aarestrup

Publikováno v: PLoS ONE, Vol 14, Iss 10, p e0222531 (2019)

BackgroundWorldwide, the number of emerging and re-emerging infectious diseases is increasing, highlighting the importance of global disease pathogen surveillance. Traditional population-based methods may fail to capture important events, particularl

Externí odkaz: https://doaj.org/article/6fdb2f6490a648aa9e978198ca906d76

Elevated CO2 increases fungal-based micro-foodwebs in soils of contrasting plant species

Autor: Mette Vestergård, Lasse Bergmark, Marie Dam

Publikováno v: Plant and Soil. 415:549-561

As different plant species support different soil communities, assessment of climate change impacts on soil communities must consider how these impacts depend on the vegetation. We investigate soil community responses to global change under different

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::7a39c6d5fde3e0e2d1f2cd57c4535901
https://doi.org/10.1007/s11104-017-3191-3

Long-term and realistic global change manipulations had low impact on diversity of soil biota in temperate heathland

Autor: Martin Holmstrup, M.F. Arndal, Andrey S. Zaitsev, Kim Pilegaard, Louise C. Andresen, Lasse Bergmark, Marie Dam, Klaus Steenberg Larsen, Anders Michelsen, Christian Damgaard, Per Ambus, Inger Kappel Schmidt, Merian Skouw Haugwitz, Claus Beier, Mette Vestergård, Soren Christensen, Anders Priemé, Slavka Georgieva, Teis Nørgaard Mikkelsen

Publikováno v: Holmstrup, M, Damgaard, C, Schmidt, I K, Arndal, M F, Beier, C, Mikkelsen, T N, Ambus, P L, Larsen, K S, Pilegaard, K, Michelsen, A, Andresen, L C, Haugwitz, M S, Bergmark, L, Priemé, A, Zaitsev, A S, Georgieva, S, Dam, M, Vestergård, M & Christensen, S 2017, ' Long-term and realistic global change manipulations had low impact on diversity of soil biota in temperate heathland ', Scientific Reports, vol. 7, 41388 . https://doi.org/10.1038/srep41388
Scientific Reports
Holmstrup, M, Damgaard, C, Schmidt, I K, Arndal, M F, Beier, C, Mikkelsen, T N, Ambus, P, Larsen, K S, Pilegaard, K, Michelsen, A, Andresen, L C, Haugwitz, M, Bergmark, L, Priemé, A, Zaitsev, A S, Georgieva, S, Dam, M, Vestergård, M & Christensen, S 2017, ' Long-term and realistic global change manipulations had low impact on diversity of soil biota in temperate heathland ', Scientific Reports, vol. 7, pp. 41388 . https://doi.org/10.1038/srep41388
Holmstrup, M, Damgaard, C, Schmidt, I K, Arndal, M F, Beier, C, Mikkelsen, T N, Ambus, P, Larsen, K S, Pilegaard, K, Michelsen, A, Andresen, L C, Haugwitz, M, Bergmark, L, Priemé, A, Zaitsev, A S, Georgieva, S, Dam, M, Vestergård, M & Christensen, S 2017, ' Long-term and realistic global change manipulations had low impact on diversity of soil biota in temperate heathland ', Scientific Reports, vol. 7, 41388 . https://doi.org/10.1038/srep41388

In a dry heathland ecosystem we manipulated temperature (warming), precipitation (drought) and atmospheric concentration of CO2 in a full-factorial experiment in order to investigate changes in below-ground biodiversity as a result of future climate

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::8105b20e4f630f4588ecc3ae03f454ad
https://curis.ku.dk/portal/da/publications/longterm-and-realistic-global-change-manipulations-had-low-impact-on-diversity-of-soil-biota-in-temperate-heathland(7d521262-bb68-48b0-b41c-2a6553687ba5).html

Soil microorganisms respond to five years of climate change manipulations and elevated atmospheric CO2 in a temperate heath ecosystem

Autor: Anders Michelsen, Lasse Bergmark, Soren Christensen, Claus Beier, Anders Priemé, Merian Skouw Haugwitz

Publikováno v: Plant and Soil. 374:211-222

Soil microbial responses to global change can affect organic matter turnover and nutrient cycling thereby altering the overall ecosystem functioning. In a large-scale experiment, we investigated the impact of 5 years of climate change and elevated at

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_________::b161c1c5337bda9c6e8f174bc42b9535
https://doi.org/10.1007/s11104-013-1855-1

Assessment of the specificity of Burkholderia and Pseudomonas qPCR assays for detection of these genera in soil using 454 pyrosequencing

Autor: Lasse Bergmark, Pernille Hasse Busk Poulsen, Anders Norman, Waleed Abu Al-Soud, Søren J. Sørensen, Lars Hestbjerg Hansen

Publikováno v: FEMS Microbiology Letters. 333:77-84

In this study, two highly specific quantitative PCR assays targeting the bacterial genera Burkholderia and Pseudomonas were developed and evaluated on soil samples. The primers were targeting different multivariate regions of the 16S rRNA gene and de

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5583ab9c778f87aa189277b2b7d91d1f
https://doi.org/10.1111/j.1574-6968.2012.02601.x