Massively parallel RNA sequencing identifies a complex immune gene repertoire in the lophotrochozoan Mytilus edulis.

Autor: Eva E R Philipp, Lars Kraemer, Frank Melzner, Albert J Poustka, Sebastian Thieme, Ulrike Findeisen, Stefan Schreiber, Philip Rosenstiel

Publikováno v: PLoS ONE, Vol 7, Iss 3, p e33091 (2012)

The marine mussel Mytilus edulis and its closely related sister species are distributed world-wide and play an important role in coastal ecology and economy. The diversification in different species and their hybrids, broad ecological distribution, a

Externí odkaz: https://doaj.org/article/f936ef82bcd04de2b9022f04a13baec7

Initial Symbiont Contact Orchestrates Host-Organ-wide Transcriptional Changes that Prime Tissue Colonization

Autor: Eva E. R. Philipp, Robert Häsler, Philip Rosenstiel, Marie-Christine Carpentier, Edward G. Ruby, Margaret J. McFall-Ngai, Lars Kraemer, Natacha Kremer, Bethany A. Rader, Caitlin A. Brennan, René Augustin, Elizabeth A. C. Heath-Heckman, Julia A. Schwartzman, Melissa A. Altura, Suzanne M. Peyer

Publikováno v: Cell Host and Microbe
Cell Host and Microbe, Elsevier, 2013, 14 (2), pp.183-94. ⟨10.1016/j.chom.2013.07.006⟩
Cell Host and Microbe, 2013, 14 (2), pp.183-94. ⟨10.1016/j.chom.2013.07.006⟩

International audience; Upon transit to colonization sites, bacteria often experience critical priming that prepares them for subsequent, specific interactions with the host; however, the underlying mechanisms are poorly described. During initiation

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::19f53850b51dde6514e51ac066270d6a

Vy-PER: eliminating false positive detection of virus integration events in next generation sequencing data

Autor: David Ellinghaus, Georg Hemmrich, Malte C. Rühlemann, Lars Wienbrandt, Silke Szymczak, Lars Kraemer, Sören Mucha, Michael Forster, Martin Stanulla, Andre Franke

Publikováno v: Scientific Reports

Several pathogenic viruses such as hepatitis B and human immunodeficiency viruses may integrate into the host genome. These virus/host integrations are detectable using paired-end next generation sequencing. However, the low number of expected true v

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4537b2dc9ce122e30dbdec5ffc8055f7
https://pubmed.ncbi.nlm.nih.gov/26166306

Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation

Autor: Lars Kraemer, Philip Rosenstiel, Juliane Wolf, Sonja Verena Bergner, Markus Lommer, Markus Schilhabel, Alexandra-Sophie Roy, Michael Hippler, Julie LaRoche, Ulrich C. Klostermeier, Reidar Andreson, Michael Specht, Robert G. Beiko, Magdalena A. Gutowska

Publikováno v: Genome Biology, 13 (7). R66.
R66
Genome Biology

Background: Biogeochemical elemental cycling is driven by primary production of biomass via phototrophic phytoplankton growth, with 40% of marine productivity being assigned to diatoms. Phytoplankton growth is widely limited by the availability of ir

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::73420ae95fd69376d2e04f9dba389c4f
http://oceanrep.geomar.de/19160/

STAMP: Extensions to the STADEN sequence analysis package for high throughput interactive microsatellite marker design

Autor: Kevin Pöhlmann, Christoph Mayer, Bank Beszteri, Christoph Held, Lars Kraemer, Stephan Frickenhaus, Florian Leese, Steffi Gäbler-Schwarz

Publikováno v: BMC Bioinformatics
BMC Bioinformatics, Vol 10, Iss 1, p 41 (2009)

Background Microsatellites (MSs) are DNA markers with high analytical power, which are widely used in population genetics, genetic mapping, and forensic studies. Currently available software solutions for high-throughput MS design (i) have shortcomin

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f04fef5b019b8e48cc1f693a0f0bbb6c