PacBio assembly of a Plasmodium knowlesi genome sequence with Hi-C correction and manual annotation of the SICAvar gene family

Autor: Lapp, SA, Geraldo, JA, Chien, J-T, Ay, F, Pakala, SB, Batugedara, G, Humphrey, J, MaHPIC consortium, DeBARRY, JD, Le Roch, KG, Galinski, MR, Kissinger, JC

Publikováno v: Parasitology, vol 145, iss 1

Plasmodium knowlesi has risen in importance as a zoonotic parasite that has been causing regular episodes of malaria throughout South East Asia. The P. knowlesi genome sequence generated in 2008 highlighted and confirmed many similarities and differe

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Passive infusion of an S2-Stem broadly neutralizing antibody protects against SARS-CoV-2 infection and lower airway inflammation in rhesus macaques.

Autor: Edwards CT; Division of Microbiology and Immunology, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Karunakaran KA; Department of Pathology, Microbiology & Immunology, Vanderbilt University, Nashville, TN 37235, USA., Garcia E; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA.; Mayo Clinic Medical Scientist Training Program, Mayo Clinic College of Medicine and Science, 200 First Street SW, Rochester, Minnesota 55356, USA., Beutler N; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA., Gagne M; Vaccine Research Center; National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA., Golden N; Tulane National Primate Research Center, Covington, LA, USA., Aoued H; Emory National Primate Research Center Genomics Core, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Pellegrini KL; Emory National Primate Research Center Genomics Core, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Burnett MR; Vaccine Research Center; National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA., Honeycutt CC; Vaccine Research Center; National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA., Lapp SA; Division of Microbiology and Immunology, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Ton T; Division of Microbiology and Immunology, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Lin MC; Division of Microbiology and Immunology, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Metz A; Division of Microbiology and Immunology, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Bombin A; Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA., Goff K; Tulane National Primate Research Center, Covington, LA, USA., Scheuermann SE; Tulane National Primate Research Center, Covington, LA, USA., Wilkes A; Division of Animal Resources, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Wood JS; Division of Animal Resources, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Ehnert S; Division of Animal Resources, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Weissman S; Division of Animal Resources, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Curran EH; Division of Pathology, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Roy M; Division of Pathology, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Dessasau E; Division of Histology, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Paiardini M; Division of Microbiology and Immunology, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA.; Emory Vaccine Center, Emory National Primate Research Center, Atlanta, Georgia, USA.; Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA., Upadhyay AA; Division of Microbiology and Immunology, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA., Moore I; Division of Pathology, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA.; Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA., Maness NJ; Tulane National Primate Research Center, Covington, LA, USA., Douek DC; Vaccine Research Center; National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, MD, USA., Piantadosi A; Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA, USA.; Emory Vaccine Center, Emory National Primate Research Center, Atlanta, Georgia, USA.; Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA., Andrabi R; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA.; IAVI Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, CA 92037, USA.; Consortium for HIV/AIDS Vaccine Development (CHAVD), The Scripps Research Institute, La Jolla, CA 92037, USA., Rogers TR; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA.; Division of Infectious Diseases, Department of Medicine, University of California, San Diego, La Jolla, CA 92037, USA., Burton DR; Department of Immunology and Microbiology, The Scripps Research Institute, La Jolla, CA 92037, USA.; IAVI Neutralizing Antibody Center, The Scripps Research Institute, La Jolla, CA 92037, USA.; Consortium for HIV/AIDS Vaccine Development (CHAVD), The Scripps Research Institute, La Jolla, CA 92037, USA.; Ragon Institute of Massachusetts General Hospital, Massachusetts Institute of Technology, and Harvard University, Cambridge, MA 02139, USA., Bosinger SE; Division of Microbiology and Immunology, Emory National Primate Research Center, Emory University, Atlanta, GA 30329, USA.; Emory Vaccine Center, Emory National Primate Research Center, Atlanta, Georgia, USA.; Department of Pathology and Laboratory Medicine, Emory University School of Medicine, Atlanta, GA, USA.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Jul 30. Date of Electronic Publication: 2024 Jul 30.

Malaria disrupts the rhesus macaque gut microbiome.

Autor: Farinella DN; Department of Biology, Wake Forest University, Winston-Salem, NC, United States., Kaur S; Department of Biology, Wake Forest University, Winston-Salem, NC, United States., Tran V; Division of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Department of Medicine, School of Medicine, Emory University, Atlanta, GA, United States., Cabrera-Mora M; Division of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Department of Medicine, School of Medicine, Emory University, Atlanta, GA, United States.; Yerkes National Primate Research Center, Emory University, Atlanta, GA, United States., Joyner CJ; Yerkes National Primate Research Center, Emory University, Atlanta, GA, United States.; Department of Infectious Diseases, University of Georgia, Athens, GA, United States., Lapp SA; Division of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Department of Medicine, School of Medicine, Emory University, Atlanta, GA, United States.; Yerkes National Primate Research Center, Emory University, Atlanta, GA, United States., Pakala SB; Institute of Bioinformatics, University of Georgia, Athens, GA, United States., Nural MV; Institute of Bioinformatics, University of Georgia, Athens, GA, United States., DeBarry JD; Institute of Bioinformatics, University of Georgia, Athens, GA, United States.; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, United States.; Emory Vaccine Center, Emory University, Atlanta, GA, United States., Kissinger JC; Institute of Bioinformatics, University of Georgia, Athens, GA, United States.; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, United States.; Department of Genetics, University of Georgia, Athens, GA, United States., Jones DP; Division of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Department of Medicine, School of Medicine, Emory University, Atlanta, GA, United States., Moreno A; Division of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Department of Medicine, School of Medicine, Emory University, Atlanta, GA, United States.; Yerkes National Primate Research Center, Emory University, Atlanta, GA, United States.; Division of Infectious Diseases, Department of Medicine, Emory University, Atlanta, GA, United States., Galinski MR; Division of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Department of Medicine, School of Medicine, Emory University, Atlanta, GA, United States.; Yerkes National Primate Research Center, Emory University, Atlanta, GA, United States.; Division of Infectious Diseases, Department of Medicine, Emory University, Atlanta, GA, United States., Cordy RJ; Department of Biology, Wake Forest University, Winston-Salem, NC, United States.; Yerkes National Primate Research Center, Emory University, Atlanta, GA, United States.

Publikováno v: Frontiers in cellular and infection microbiology [Front Cell Infect Microbiol] 2023 Jan 13; Vol. 12, pp. 1058926. Date of Electronic Publication: 2023 Jan 13 (Print Publication: 2022).

MaHPIC malaria systems biology data from Plasmodium cynomolgi sporozoite longitudinal infections in macaques.

Autor: DeBarry JD; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA., Nural MV; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA., Pakala SB; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Department of Medicine, Vanderbilt University Medical Center, Nashville, TN, 37232, USA., Nayak V; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Cancer Data Science Initiatives, Frederick National Laboratory for Cancer Research, Post Office Box B, Frederick, MD, 21702, USA., Warrenfeltz S; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, 30602, USA., Humphrey J; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, 30602, USA., Lapp SA; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Department of Pediatrics, Emory University School of Medicine, Atlanta, GA, 30322, USA., Cabrera-Mora M; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Division of Pulmonary, Allergy, Critical Care, and Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA., Brito CFA; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Laboratório de Malária, Instituto René Rachou/Fiocruz Minas, Av. Augusto de Lima 1715, Belo Horizonte, MG, 30190 009, Brazil., Jiang J; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA., Saney CL; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Center for Vaccines and Immunology, University of Georgia, Athens, GA, 30605, USA., Hankus A; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Senior Public Health Informaticist, MITRE Corp, Atlanta, GA, 30345, USA., Stealey HM; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Department of Biomedical Engineering, University of Texas at Austin, Austin, TX, 78712, USA., DeBarry MB; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA., Lackman N; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA., Legall N; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Interdisciplinary Disease Ecology Across Scales Research Traineeship Program, Institute of Bioinformatics, Center for the Ecology of Infectious Diseases, University of Georgia, Athens, GA, 30602, USA., Lee K; Center for Integrative Genomics, School of Biology, Georgia Institute of Technology, Atlanta, GA, 30332, USA., Tang Y; School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, 30332, USA.; Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, 02115, USA., Gupta A; The Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, 30332, USA.; Valted Seq, 704 Quince Orchard Rd, Gaithersburg, MD, 20878, USA., Trippe ED; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Federal Drug Administration, Silver Spring, MD, 20993, USA., Bridger RR; Complex Carbohydrate Research Center, Department of Biochemistry, University of Georgia, Athens, GA, 30602, USA., Weatherly DB; Complex Carbohydrate Research Center, Department of Biochemistry, University of Georgia, Athens, GA, 30602, USA., Peterson MS; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA., Jiang X; Division of Endocrinology, Metabolism & Lipid Research, Washington University School of Medicine, St. Louis, MO, 63110, USA., Tran V; Division of Pulmonary, Allergy, Critical Care, & Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA., Uppal K; Division of Pulmonary, Allergy, Critical Care, & Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA., Fonseca LL; The Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, 30332, USA.; Division of Pulmonary, Critical Care, and Sleep Medicine, Department of Medicine, University of Florida, Gainesville, FL, 32603, USA., Joyner CJ; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Center for Tropical and Emerging Global Disease, University of Georgia, Athens, GA, 30602, USA.; Center for Vaccines and Immunology, Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, GA, 30602, USA., Karpuzoglu E; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Department of Biosciences and Diagnostic Imaging, College of Veterinary Medicine, University of Georgia, Athens, GA, 30602, USA., Cordy RJ; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Department of Biology, Wake Forest University, Winston Salem, NC, 27103, USA., Meyer EVS; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Institutional Animal Care and Use Committee, Research Compliance and Research Integrity Office, Emory University, Atlanta, GA, 30322, USA., Wells LL; Complex Carbohydrate Research Center, Department of Biochemistry, University of Georgia, Athens, GA, 30602, USA., Ory DS; Division of Endocrinology, Metabolism & Lipid Research, Washington University School of Medicine, St. Louis, MO, 63110, USA.; Casma Therapeutics, Cambridge, MA, 02139, USA., Lee FE; Division of Pulmonary, Allergy, Critical Care, & Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA.; Lowance Center for Human Immunology, Emory University, Atlanta, GA, 30322, USA., Tirouvanziam R; Department of Pediatrics, Emory University School of Medicine, Atlanta, GA, 30322, USA., Gutiérrez JB; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; Department of Mathematics, Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA.; University of Texas at San Antonio, San Antonio, TX, 78249, USA., Ibegbu C; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA., Lamb TJ; Department of Pediatrics, Emory University School of Medicine, Atlanta, GA, 30322, USA.; Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA.; Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Department of Pathology, University of Utah, Salt Lake City, UT, 84112, USA., Pohl J; Biotechnology Core Facility Branch, Centers for Disease Control and Prevention, Atlanta, GA, 30333, USA., Pruett ST; Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; University of Tennessee, Knoxville, TN, 37996, USA., Jones DP; Division of Pulmonary, Allergy, Critical Care, & Sleep Medicine, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA., Styczynski MP; School of Chemical & Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA, 30332, USA., Voit EO; The Wallace H. Coulter Department of Biomedical Engineering, Georgia Institute of Technology and Emory University, Atlanta, GA, 30332, USA., Moreno A; Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA., Galinski MR; Emory Vaccine Center, Yerkes/Emory National Primate Research Center, Emory University, Atlanta, GA, 30329, USA.; Division of Infectious Diseases, Department of Medicine, Emory University School of Medicine, Atlanta, GA, 30322, USA., Kissinger JC; Institute of Bioinformatics, University of Georgia, Athens, GA, 30602, USA. jkissing@uga.edu.; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, GA, 30602, USA. jkissing@uga.edu.; Department of Genetics, University of Georgia, Athens, GA, 30602, USA. jkissing@uga.edu.

Publikováno v: Scientific data [Sci Data] 2022 Nov 24; Vol. 9 (1), pp. 722. Date of Electronic Publication: 2022 Nov 24.