Epidemiology and antimicrobial resistance profile of invasive non-typhoidal Salmonella from the Philippines Antimicrobial Resistance Surveillance Program, 2014-2018.

Autor: Sia SB; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines.; These authors contributed equally., Ablola FB; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines.; These authors contributed equally., Lagrada ML; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Olorosa AM; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Gayeta JM; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Limas MT; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Jamoralin MC Jr; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Macaranas PKV; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Espiritu HGO; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Borlasa JJB; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Villamin EAS; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Alea MCG; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Guia JEV; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines.

Publikováno v: Western Pacific surveillance and response journal : WPSAR [Western Pac Surveill Response J] 2023 Sep 06; Vol. 14 (3), pp. 1-7. Date of Electronic Publication: 2023 Sep 06 (Print Publication: 2023).

Integrating Scalable Genome Sequencing Into Microbiology Laboratories for Routine Antimicrobial Resistance Surveillance.

Autor: Kekre M; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Old Road Campus, Oxford, United Kingdom.; Wellcome Genome Campus, Hinxton, United Kingdom., Arevalo SA; Colombian Integrated Program for Antimicrobial Resistance Surveillance-Coipars, CI Tibaitatá, Corporación Colombiana de Investigación Agropecuaria (AGROSAVIA), Tibaitatá-Mosquera, Cundinamarca, Colombia., Valencia MF; Colombian Integrated Program for Antimicrobial Resistance Surveillance-Coipars, CI Tibaitatá, Corporación Colombiana de Investigación Agropecuaria (AGROSAVIA), Tibaitatá-Mosquera, Cundinamarca, Colombia., Lagrada ML; Research Institute for Tropical Medicine, Muntinlupa, Philippines., Macaranas PKV; Research Institute for Tropical Medicine, Muntinlupa, Philippines., Nagaraj G; Central Research Laboratory, Kempegowda Institute of Medical Sciences, Bengaluru, India., Oaikhena AO; Department of Pharmaceutical Microbiology, University of Ibadan, Ibadan, Nigeria., Olorosa AM; Research Institute for Tropical Medicine, Muntinlupa, Philippines., Aanensen DM; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Old Road Campus, Oxford, United Kingdom.; Wellcome Genome Campus, Hinxton, United Kingdom.

Publikováno v: Clinical infectious diseases : an official publication of the Infectious Diseases Society of America [Clin Infect Dis] 2021 Dec 01; Vol. 73 (Suppl_4), pp. S258-S266.

Serotype distribution and antimicrobial resistance of Streptococcus pneumoniae in the Philippines, 2012-2018.

Autor: Sia SB; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Lagrada ML; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Gayeta JM; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Masim MAL; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Abad JP; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Magbanua MA; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines., Ablola FB; Research Institute for Tropical Medicine, Department of Health, Manila, Philippines.

Publikováno v: Western Pacific surveillance and response journal : WPSAR [Western Pac Surveill Response J] 2021 Nov 29; Vol. 12 (4), pp. 1-8. Date of Electronic Publication: 2021 Nov 29 (Print Publication: 2021).

Genomic surveillance of Neisseria gonorrhoeae in the Philippines, 2013-2014.

Autor: Jamoralin MC Jr; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines., Argimón S; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom., Lagrada ML; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Villamin AS; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Masim ML; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Gayeta JM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Boehme KD; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Olorosa AM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Sia SB; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Hufano CM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Cohen V; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Hernandez LT; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Jeffrey B; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Abudahab K; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Stelling J; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Holden MTG; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Aanensenb DM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, Philippines.; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, England, United Kingdom.; Brigham and Women's Hospital, Boston (MA), USA.; University of St Andrews School of Medicine, St Andrews, Scotland, United Kingdom.; Centre for Genomic Pathogen Surveillance, Big Data Institute, University of Oxford, Oxford, England, United Kingdom.; These authors contributed equally to this work.; These authors contributed equally to this work., Carlosa CC; These authors contributed equally to this work.

Publikováno v: Western Pacific surveillance and response journal : WPSAR [Western Pac Surveill Response J] 2021 Feb 26; Vol. 12 (1), pp. 17-25. Date of Electronic Publication: 2021 Feb 26 (Print Publication: 2021).

Integrating whole-genome sequencing within the National Antimicrobial Resistance Surveillance Program in the Philippines.

Autor: Argimón S; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, UK., Masim MAL; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Gayeta JM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Lagrada ML; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Macaranas PKV; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Cohen V; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, UK., Limas MT; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Espiritu HO; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Palarca JC; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Chilam J; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Jamoralin MC Jr; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Villamin AS; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Borlasa JB; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Olorosa AM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Hernandez LFT; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Boehme KD; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Jeffrey B; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, UK., Abudahab K; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, UK., Hufano CM; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines.; St. Luke's Medical Center-Global City, Taguig, Metro Manila, The Philippines., Sia SB; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines., Stelling J; Brigham and Women's Hospital, Boston, MA, USA., Holden MTG; University of St Andrews School of Medicine, St Andrews, Scotland, UK., Aanensen DM; Centre for Genomic Pathogen Surveillance, Wellcome Genome Campus, Hinxton, UK. david.aanensen@bdi.ox.ac.uk.; Big Data Institute, Li Ka Shing Centre for Health Information and Discovery, University of Oxford, Oxford, UK. david.aanensen@bdi.ox.ac.uk., Carlos CC; Antimicrobial Resistance Surveillance Reference Laboratory, Research Institute for Tropical Medicine, Muntinlupa, The Philippines. ccarlosphl@yahoo.com.

Publikováno v: Nature communications [Nat Commun] 2020 Jun 01; Vol. 11 (1), pp. 2719. Date of Electronic Publication: 2020 Jun 01.