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Rapport d’activités 2022. Laboratoire Santé Environnement et Microbiologie, Laboratoire National de Référence Microbiologie des coquillages

Autor: Garry, Pascal, Le Guyader, Soizick

Ce rapport présente une synthèse des actions, et travaux réalisés par le laboratoire Santé Environnement et Microbiologie(LSEM) pendant l’année 2022. Les actions du Laboratoire National de Référence pour la Microbiologie des Coquillages, le

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_________7::b203a0a9b0265794c29a0a9f429e8ae6
https://archimer.ifremer.fr/doc/00831/94264/

Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance

Autor: Munk, Patrick, Brinch, Christian, Møller, Frederik Duus, Petersen, Thomas N., Hendriksen, Rene S., Seyfarth, Anne Mette, Kjeldgaard, Jette S., Svendsen, Christina Aaby, van Bunnik, Bram, Berglund, Fanny, Bego, Artan, Power, Pablo, Rees, Catherine, Lambrinidis, Dionisia, Neilson, Elizabeth Heather Jakobsen, Gibb, Karen, Coventry, Kris, Collignon, Peter, Cassar, Susan, Allerberger, Franz, Begum, Anowara, Hossain, Zenat Zebin, Worrell, Carlon, Vandenberg, Olivier, Pieters, Ilse, Victorien, Dougnon Tamègnon, Gutierrez, Angela Daniela Salazar, Soria, Freddy, Grujić, Vesna Rudić, Mazalica, Nataša, Rahube, Teddie O., Tagliati, Carlos Alberto, Rodrigues, Dalia, Oliveira, Guilherme, de Souza, Larissa Camila Ribeiro, Ivanov, Ivan, Juste, Bonkoungou Isidore, Oumar, Traoré, Sopheak, Thet, Vuthy, Yith, Ngandijo, Antoinette, Nzouankeu, Ariane, Olivier, Ziem A. Abah Jacques, Yost, Christopher K., Kumar, Pratik, Brar, Satinder Kaur, Tabo, Djim-Adjim, Adell, Aiko D., Paredes-Osses, Esteban, Martinez, Maria Cristina, Cuadros-Orellana, Sara, Ke, Changwen, Zheng, Huanying, Baisheng, Li, Lau, Lok Ting, Chung, Teresa, Jiao, Xiaoyang, Yu, Yongjie, JiaYong, Zhao, Morales, Johan F. Bernal, Valencia, Maria Fernanda, Donado-Godoy, Pilar, Coulibaly, Kalpy Julien, Hrenovic, Jasna, Jergović, Matijana, Karpíšková, Renáta, Deogratias, Zozo Nyarukweba, Elsborg, Bodil, Hansen, Lisbeth Truelstrup, Jensen, Pernille Erland, Abouelnaga, Mohamed, Salem, Mohamed Fathy, Koolmeister, Marliin, Legesse, Mengistu, Eguale, Tadesse, Heikinheimo, Annamari, Le Guyader, Soizick, Schaeffer, Julien, Villacis, Jose Eduardo, Sanneh, Bakary, Malania, Lile, Nitsche, Andreas, Brinkmann, Annika, Schubert, Sara, Hesse, Sina, Berendonk, Thomas U., Saba, Courage Kosi Setsoafia, Mohammed, Jibril, Feglo, Patrick Kwame, Banu, Regina Ama, Kotzamanidis, Charalampos, Lytras, Efthymios, Lickes, Sergio A., Kocsis, Bela, Solymosi, Norbert, Thorsteinsdottir, Thorunn R., Hatha, Abdulla Mohamed, Ballal, Mamatha, Bangera, Sohan Rodney, Fani, Fereshteh, Alebouyeh, Masoud, Morris, Dearbhaile, O’Connor, Louise, Cormican, Martin, Moran-Gilad, Jacob, Battisti, Antonio, Diaconu, Elena Lavinia, Corno, Gianluca, Di Cesare, Andrea, Alba, Patricia, Hisatsune, Junzo, Yu, Liansheng, Kuroda, Makoto, Sugai, Motoyuki, Kayama, Shizuo, Shakenova, Zeinegul, Kiiyukia, Ciira, Ng’eno, Eric, Raka, Lul, Jamil, Kazi, Fakhraldeen, Saja Adel, Alaati, Tareq, Bērziņš, Aivars, Avsejenko, Jeļena, Kokina, Kristina, Streikisa, Madara, Bartkevics, Vadims, Matar, Ghassan M., Daoud, Ziad, Pereckienė, Asta, Butrimaite-Ambrozeviciene, Ceslova, Penny, Christian, Bastaraud, Alexandra, Rasolofoarison, Tiavina, Collard, Jean-Marc, Samison, Luc Hervé, Andrianarivelo, Mala Rakoto, Banda, Daniel Lawadi, Amin, Arshana, Rajandas, Heraa, Parimannan, Sivachandran, Spiteri, David, Haber, Malcolm Vella, Santchurn, Sunita J., Vujacic, Aleksandar, Djurovic, Dijana, Bouchrif, Brahim, Karraouan, Bouchra, Vubil, Delfino Carlos, Pal, Pushkar, Schmitt, Heike, van Passel, Mark, Jeunen, Gert-Jan, Gemmell, Neil, Chambers, Stephen T., Mendoza, Fania Perez, Huete-Pιrez, Jorge, Vilchez, Samuel, Ahmed, Akeem Olayiwola, Adisa, Ibrahim Raufu, Odetokun, Ismail Ayoade, Fashae, Kayode, Sørgaard, Anne-Marie, Wester, Astrid Louise, Ryrfors, Pia, Holmstad, Rune, Mohsin, Mashkoor, Hasan, Rumina, Shakoor, Sadia, Gustafson, Natalie Weiler, Schill, Claudia Huber, Rojas, Maria Luz Zamudio, Velasquez, Jorge Echevarria, Magtibay, Bonifacio B., Catangcatang, Kris, Sibulo, Ruby, Yauce, Felipe Campos, Wasyl, Dariusz, Manaia, Celia, Rocha, Jaqueline, Martins, Jose, Álvaro, Pedro, Di Yoong Wen, Doris, Shin, Hanseob, Hur, Hor-Gil, Yoon, Sukhwan, Bosevska, Golubinka, Kochubovski, Mihail, Cojocaru, Radu, Burduniuc, Olga, Hong, Pei-Ying, Perry, Meghan Rose, Gassama, Amy, Radosavljevic, Vladimir, Tay, Moon Y. F., Zuniga-Montanez, Rogelio, Wuertz, Stefan, Gavačová, Dagmar, Pastuchová, Katarína, Truska, Peter, Trkov, Marija, Keddy, Karen, Esterhuyse, Kerneels, Song, Min Joon, Quintela-Baluja, Marcos, Lopez, Mariano Gomez, Cerdà-Cuéllar, Marta, Perera, R.R.D.P., Bandara, N.K.B.K.R.G.W., Premasiri, H.I., Pathirage, Sujatha, Charlemagne, Kareem, Rutgersson, Carolin, Norrgren, Leif, Örn, Stefan, Boss, Renate, Van der Heijden, Tanja, Hong, Yu-Ping, Kumburu, Happiness Houka, Mdegela, Robinson Hammerthon, Hounmanou, Yaovi Mahuton Gildas, Chonsin, Kaknokrat, Suthienkul, Orasa, Thamlikitkul, Visanu, de Roda Husman, Ana Maria, Bidjada, Bawimodom, Njanpop-Lafourcade, Berthe-Marie, Nikiema-Pessinaba, Somtinda Christelle, Levent, Belkis, Kurekci, Cemil, Ejobi, Francis, Kalule, John Bosco, Thomsen, Jens, Obaidi, Ouidiane, Jassim, Laila Mohamed, Moore, Andrew, Leonard, Anne, Graham, David W., Bunce, Joshua T., Zhang, Lihong, Gaze, William H., Lefor, Brett, Capone, Drew, Sozzi, Emanuele, Brown, Joe, Meschke, John Scott, Sobsey, Mark D., Davis, Michael, Beck, Nicola Koren, Sukapanpatharam, Pardi, Truong, Phuong, Lilienthal, Ronald, Kang, Sanghoon, Wittum, Thomas E., Rigamonti, Natalia, Baklayan, Patricia, Van, Chinh Dang, Tran, Doan Minh Nguyen, Do Phuc, Nguyen, Kwenda, Geoffrey, Larsson, D. G. Joakim, Koopmans, Marion, Woolhouse, Mark, Aarestrup, Frank M.

Publikováno v: Nature Communications, 13(1):7251. Nature Publishing Group
Nature Communications
Nature Communications (2041-1723) (Springer Science and Business Media LLC), 2022-12, Vol. 13, N. 1, P. 7251 (16p.)
Munk, P, Brinch, C, Møller, F D, Petersen, T N, Hendriksen, R S, Seyfarth, A M, Kjeldgaard, J S, Svendsen, C A, van Bunnik, B, Berglund, F, Global, S S C, Larsson, D G J, Koopmans, M, Woolhouse, M & Aarestrup, F M 2022, ' Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance ', Nature Communications, vol. 13, no. 1, 7251 . https://doi.org/10.1038/s41467-022-34312-7
Munk, P, Brinch, C, Møller, F D, Petersen, T N, Hendriksen, R S, Seyfarth, A M, Kjeldgaard, J S, Svendsen, C A, van Bunnik, B, Berglund, F, Bego, A, Power, P, Rees, C, Lambrinidis, D, Neilson, E H J, Gibb, K, Coventry, K, Collignon, P, Cassar, S, Allerberger, F, Begum, A, Hossain, Z Z, Worrell, C, Vandenberg, O, Pieters, I, Victorien, D T, Gutierrez, A D S, Soria, F, Grujić, V R, Mazalica, N, Rahube, T O, Tagliati, C A, Rodrigues, D, Oliveira, G, de Souza, L C R, Ivanov, I, Juste, B I, Oumar, T, Sopheak, T, Vuthy, Y, Ngandijo, A, Nzouankeu, A, Olivier, Z A A J, Yost, C K, Hansen, L T, Jensen, P E, Parimannan, S, Hounmanou, Y M G, Thomsen, J, Aarestrup, F M & Global Sewage Surveillance Consortium 2022, ' Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance ', Nature Communications, vol. 13, 7251 . https://doi.org/10.1038/s41467-022-34312-7
Munk, P, Brinch, C, Møller, F D, Petersen, T N, Hendriksen, R S, Seyfarth, A M, Kjeldgaard, J, Svendsen, C A, van Bunnik, B A D, Berglund, F, Larsson, D G J, Koopmans, M P G & Woolhouse, M & Aarestrup, F M 2022, ' Genomic analysis of sewage from 101 countries reveals global landscape of antimicrobial resistance ', Nature Communications, vol. 13, 7251 . https://doi.org/10.1038/s41467-022-34312-7

Antimicrobial resistance (AMR) is a major threat to global health. Understanding the emergence, evolution, and transmission of individual antibiotic resistance genes (ARGs) is essential to develop sustainable strategies combatting this threat. Here,

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::303f29efecb5b8304deef73449e4f6cd
https://pure.eur.nl/en/publications/a8b1eb7a-a1f6-4d66-aec6-d86b000f9453

A nationwide indicator to smooth and normalize heterogeneous SARS-CoV-2 RNA data in wastewater

Autor: Cluzel, Nicolas, Courbariaux, Marie, Wang, Siyun, Moulin, Laurent, Wurtzer, Sébastien, Bertrand, Isabelle, Laurent, Karine, Monfort, Patrick, Gantzer, Christophe, Le Guyader, Soizick, Boni, Mickaël, Mouchel, Jean-marie, Maréchal, Vincent, Nuel, Grégory, Maday, Yvon, Obépine Consortium

Publikováno v: Environment International
Environment International, Elsevier, 2022, 158 (106998), ⟨10.1016/j.envint.2021.106998⟩
Environment International, Vol 158, Iss, Pp 106998-(2022)
Environment International, 2022, 158 (106998), pp.106998. ⟨10.1016/j.envint.2021.106998⟩
Environment International, Elsevier, 2022, 158, pp.106998. ⟨10.1016/j.envint.2021.106998⟩
Environment International (0160-4120) (Elsevier BV), 2022-01, Vol. 158, P. 106998 (21p.)

Graphical abstract
Since many infected people experience no or few symptoms, the SARS-CoV-2 epidemic is frequently monitored through massive virus testing of the population, an approach that may be biased and may be difficult to sustain in low-i

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6ba6d4c4289f0a6157983ec9f568e309
https://hal.archives-ouvertes.fr/hal-03513871/document

Human and Animal RNA Virus Diversity Detected by Metagenomics in Cameroonian Clams

Autor: Bonny, Patrice, Schaeffer, Julien, Besnard, Alban, Desdouits, Marion, Essia Ngang, Jean Justin, Le Guyader, Soizick

Publikováno v: Frontiers In Microbiology (1664-302X) (Frontiers Media), 2021-11, Vol. 12, P. 770385 (15p.)

Many recent pandemics have been recognized as zoonotic viral diseases. While their origins remain frequently unknown, environmental contamination may play an important role in emergence. Thus, being able to describe the viral diversity in environment

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_________7::181db10ffaf53510b46e24d5ae210a3f
https://archimer.ifremer.fr/doc/00737/84861/