Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Lívia S. Zaramela"'
Autor:
Alan P. R. Lorenzetti, Ulrike Kusebauch, Lívia S. Zaramela, Wei-Ju Wu, João P. P. de Almeida, Serdar Turkarslan, Adrián L. G. de Lomana, José V. Gomes-Filho, Ricardo Z. N. Vêncio, Robert L. Moritz, Tie Koide, Nitin S. Baliga
Publikováno v:
mSystems, Vol 8, Iss 2 (2023)
ABSTRACT The scale of post-transcriptional regulation and the implications of its interplay with other forms of regulation in environmental acclimation are underexplored for organisms of the domain Archaea. Here, we have investigated the scale of pos
Externí odkaz:
https://doaj.org/article/249e0bfd07b94f9cace7c4b1be67cff5
Autor:
Cameron Martino, Livia S. Zaramela, Bei Gao, Mallory Embree, Janna Tarasova, Seth J. Parker, Yanhan Wang, Huikuan Chu, Peng Chen, Kuei-Chuan Lee, Daniela Domingos Galzerani, Jivani M. Gengatharan, Asama Lekbua, Maxwell Neal, Rob Knight, Hidekazu Tsukamoto, Christian M. Metallo, Bernd Schnabl, Karsten Zengler
Publikováno v:
Nature Communications, Vol 13, Iss 1, Pp 1-11 (2022)
Chronic alcohol use is associated with intestinal bacterial overgrowth and dysbiosis, but the contribution of ethanol is unclear. Here, using mouse models, the authors find that ethanol is not directly metabolized by the gut microbiota, and that indu
Externí odkaz:
https://doaj.org/article/292675b6fc0d412ca90d9a63b7406e41
synDNA—a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing
Publikováno v:
mSystems, Vol 7, Iss 6 (2022)
ABSTRACT Microbiome studies have the common goal of determining which microbial taxa are present, respond to specific conditions, or promote phenotypic changes in the host. Most of these studies rely on relative abundance measurements to drive conclu
Externí odkaz:
https://doaj.org/article/452e62cdad074fd0b3173b0669cfd58a
Autor:
Daniel Hakim, Stephen Wandro, Karsten Zengler, Livia S. Zaramela, Brent Nowinski, Austin Swafford, Qiyun Zhu, Se Jin Song, Antonio Gonzalez, Daniel McDonald, Rob Knight
Publikováno v:
mSystems, Vol 7, Iss 5 (2022)
ABSTRACT Assigning taxonomy remains a challenging topic in microbiome studies, due largely to ambiguity of reads which overlap multiple reference genomes. With the Web of Life (WoL) reference database hosting 10,575 reference genomes and growing, the
Externí odkaz:
https://doaj.org/article/eecc9545c0544bd6bcd9a83695bfda89
Autor:
Morgan M. Severn, Michael R. Williams, Ali Shahbandi, Zoie L. Bunch, Laurie M. Lyon, Amber Nguyen, Livia S. Zaramela, Daniel A. Todd, Karsten Zengler, Nadja B. Cech, Richard L. Gallo, Alexander R. Horswill
Publikováno v:
mBio, Vol 13, Iss 3 (2022)
ABSTRACT Staphylococcus hominis is frequently isolated from human skin, and we hypothesize that it may protect the cutaneous barrier from opportunistic pathogens. We determined that S. hominis makes six unique autoinducing peptide (AIP) signals that
Externí odkaz:
https://doaj.org/article/d4ba64cd5ebc4fd394a77411c3ce3fc8
Autor:
Rongrong Zhou, Cristina Llorente, Jinling Cao, Livia S. Zaramela, Suling Zeng, Bei Gao, Shang-Zhen Li, Ryan D. Welch, Feng-Qing Huang, Lian-Wen Qi, Chuyue Pan, Yan Huang, Pengchen Zhou, Iris Beussen, Ying Zhang, Gregory Bryam, Oliver Fiehn, Lirui Wang, E-Hu Liu, Ruth T. Yu, Michael Downes, Ronald M. Evans, Karrie Goglin, Derrick E. Fouts, David A. Brenner, Lars Bode, Xuegong Fan, Karsten Zengler, Bernd Schnabl
Publikováno v:
Cellular and Molecular Gastroenterology and Hepatology, Vol 12, Iss 1, Pp 293-320 (2021)
Background & Aims: Fucosyltransferase 2 (Fut2)-mediated intestinal α1- 2-fucosylation is important for host–microbe interactions and has been associated with several diseases, but its role in obesity and hepatic steatohepatitis is not known. The a
Externí odkaz:
https://doaj.org/article/5af44eddfde74e05a6ad638356662629
Autor:
James T. Morton, Clarisse Marotz, Alex Washburne, Justin Silverman, Livia S. Zaramela, Anna Edlund, Karsten Zengler, Rob Knight
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-11 (2019)
Most microbiome studies make conclusions based on changes in relative abundance of taxa, inferred from sequencing data. Here, the authors highlight common pitfalls in comparing relative abundance across samples, and identify solutions that reveal mic
Externí odkaz:
https://doaj.org/article/23e13887be754c6794e21478d47ef59f
Autor:
Amina Bouslimani, Ricardo da Silva, Tomasz Kosciolek, Stefan Janssen, Chris Callewaert, Amnon Amir, Kathleen Dorrestein, Alexey V. Melnik, Livia S. Zaramela, Ji-Nu Kim, Gregory Humphrey, Tara Schwartz, Karenina Sanders, Caitriona Brennan, Tal Luzzatto-Knaan, Gail Ackermann, Daniel McDonald, Karsten Zengler, Rob Knight, Pieter C. Dorrestein
Publikováno v:
BMC Biology, Vol 17, Iss 1, Pp 1-20 (2019)
Abstract Background Use of skin personal care products on a regular basis is nearly ubiquitous, but their effects on molecular and microbial diversity of the skin are unknown. We evaluated the impact of four beauty products (a facial lotion, a moistu
Externí odkaz:
https://doaj.org/article/ed973266ae3f472db8861a6e871c72bb
Autor:
Yi-Fan Liu, Jing Chen, Livia S. Zaramela, Li-Ying Wang, Serge Maurice Mbadinga, Zhao-Wei Hou, Xiao-Lin Wu, Ji-Dong Gu, Karsten Zengler, Bo-Zhong Mu
Publikováno v:
mSystems, Vol 5, Iss 2 (2020)
ABSTRACT Euryarchaeal lineages have been believed to have a methanogenic last common ancestor. However, members of euryarchaeal Archaeoglobi have long been considered nonmethanogenic and their evolutionary history remains elusive. Here, three high-qu
Externí odkaz:
https://doaj.org/article/9e91808439d24706948115d91a8eefe0
Autor:
Michael R. Williams, Laura Cau, Yichen Wang, Drishti Kaul, James A. Sanford, Livia S. Zaramela, Shadi Khalil, Anna M. Butcher, Karsten Zengler, Alexander R. Horswill, Christopher L. Dupont, Alain Hovnanian, Richard L. Gallo
Publikováno v:
Cell Reports, Vol 30, Iss 9, Pp 2923-2933.e7 (2020)
Summary: Netherton syndrome (NS) is a monogenic skin disease resulting from loss of function of lymphoepithelial Kazal-type-related protease inhibitor (LEKTI-1). In this study we examine if bacteria residing on the skin are influenced by the loss of
Externí odkaz:
https://doaj.org/article/4a39ee2e5bee4c41958fd865d6e7737e