Genome Project Standards in a New Era of Sequencing

Autor: Genomic Standards Consortium Human Microbiome Project Jumpstart Consortium, Chain, P. S. G., Grafham, D. V., Fulton, R. S., FitzGerald, M. G., Hostetler, J., Muzny, D., Ali, J., Birren, B., Bruce, D. C., Buhay, C., Cole, J. R., Ding, Y., Dugan, S., Field, D., Garrity, G. M., Gibbs, R., Graves, T., Han, C. S., Harrison, S. H., Highlander, S., Hugenholtz, P., Khouri, H. M., Kodira, C. D., Kolker, E., Kyrpides, N. C., Lang, D., Lapidus, A., Malfatti, S. A., Markowitz, V., Metha, T., Nelson, K. E., Parkhill, J., Pitluck, S., Qin, X., Read, T. D., Schmutz, J., Sozhamannan, S., Sterk, P., Strausberg, R. L., Sutton, G., Thomson, N. R., Tiedje, J. M., Weinstock, G., Wollam, A., Detter, J. C.

Publikováno v: Science, 2009 Oct 01. 326(5950), 236-237.

Externí odkaz: https://www.jstor.org/stable/40328829

A genomic catalog of Earth’s microbiomes

Autor: Nayfach, S., Roux, S., Seshadri, R., Udwary, D., Varghese, N., Schulz, F., Wu, D., Paez-Espino, D., Chen, I., Huntemann, M., Palaniappan, K., Ladau, J., Mukherjee, S., Reddy, T., Nielsen, T., Kirton, E., Faria, J., Edirisinghe, J., Henry, C., Jungbluth, S., Chivian, D., Dehal, P., Wood-Charlson, E., Arkin, A., Tringe, S., Visel, A., Abreu, H., Acinas, S., Allen, E., Allen, M., Alteio, L., Andersen, G., Anesio, A., Attwood, G., Avila-Magaña, V., Badis, Y., Bailey, J., Baker, B., Baldrian, P., Barton, H., Beck, D., Becraft, E., Beller, H., Beman, J., Bernier-Latmani, R., Berry, T., Bertagnolli, A., Bertilsson, S., Bhatnagar, J., Bird, J., Blanchard, J., Blumer-Schuette, S., Bohannan, B., Borton, M., Brady, A., Brawley, S., Brodie, J., Brown, S., Brum, J., Brune, A., Bryant, D., Buchan, A., Buckley, D., Buongiorno, J., Cadillo-Quiroz, H., Caffrey, S., Campbell, A., Campbell, B., Carr, S., Carroll, J., Cary, S., Cates, A., Cattolico, R., Cavicchioli, R., Chistoserdova, L., Coleman, M., Constant, P., Conway, J., Mac Cormack, W., Crowe, S., Crump, B., Currie, C., Daly, R., DeAngelis, K., Denef, V., Denman, S., Desta, A., Dionisi, H., Dodsworth, J., Dombrowski, N., Donohue, T., Dopson, M., Driscoll, T., Dunfield, P., Dupont, C., Dynarski, K., Edgcomb, V., Edwards, E., Elshahed, M., Figueroa, I., Flood, B., Fortney, N., Fortunato, C., Francis, C., Gachon, C., Garcia, S., Gazitua, M., Gentry, T., Gerwick, L., Gharechahi, J., Girguis, P., Gladden, J., Gradoville, M., Grasby, S., Gravuer, K., Grettenberger, C., Gruninger, R., Guo, J., Habteselassie, M., Hallam, S., Hatzenpichler, R., Hausmann, B., Hazen, T., Hedlund, B., Henny, C., Herfort, L., Hernandez, M., Hershey, O., Hess, M., Hollister, E., Hug, L., Hunt, D., Jansson, J., Jarett, J., Kadnikov, V., Kelly, C., Kelly, R., Kelly, W., Kerfeld, C., Kimbrel, J., Klassen, J., Konstantinidis, K., Lee, L., Li, W., Loder, A., Loy, A., Lozada, M., MacGregor, B., Magnabosco, C., Maria da Silva, A., McKay, R., McMahon, K., McSweeney, C., Medina, M., Meredith, L., Mizzi, J., Mock, T., Momper, L., Moran, M., Morgan-Lang, C., Moser, D., Muyzer, G., Myrold, D., Nash, M., Nesbø, C., Neumann, A., Neumann, R., Noguera, D., Northen, T., Norton, J., Nowinski, B., Nüsslein, K., O’Malley, M., Oliveira, R., Maia de Oliveira, V., Onstott, T., Osvatic, J., Ouyang, Y., Pachiadaki, M., Parnell, J., Partida-Martinez, L., Peay, K., Pelletier, D., Peng, X., Pester, M., Pett-Ridge, J., Peura, S., Pjevac, P., Plominsky, A., Poehlein, A., Pope, P., Ravin, N., Redmond, M., Reiss, R., Rich, V., Rinke, C., Rodrigues, J., Rodriguez-Reillo, W., Rossmassler, K., Sackett, J., Salekdeh, G., Saleska, S., Scarborough, M., Schachtman, D., Schadt, C., Schrenk, M., Sczyrba, A., Sengupta, A., Setubal, J., Shade, A., Sharp, C., Sherman, D., Shubenkova, O., Sierra-Garcia, I., Simister, R., Simon, H., Sjöling, S., Slonczewski, J., Correa de Souza, R., Spear, J., Stegen, J., Stepanauskas, R., Stewart, F., Suen, G., Sullivan, M., Sumner, D., Swan, B., Swingley, W., Tarn, J., Taylor, G., Teeling, H., Tekere, M., Teske, A., Thomas, T., Thrash, C., Tiedje, J., Ting, C., Tully, B., Tyson, G., Ulloa, O., Valentine, D., Van Goethem, M., VanderGheynst, J., Verbeke, T., Vollmers, J., Vuillemin, A., Waldo, N., Walsh, D., Weimer, B., Whitman, T., van der Wielen, P., Wilkins, M., Williams, T., Woodcroft, B., Woolet, J., Wrighton, K., Ye, J., Young, E., Youssef, N., Yu, F., Zemskaya, T., Ziels, R., Woyke, T., Mouncey, N., Ivanova, N., Kyrpides, N., Eloe-Fadrosh, E., Consortium, I.

Publikováno v: CONICET Digital (CONICET)
Consejo Nacional de Investigaciones Científicas y Técnicas
instacron:CONICET
Nature biotechnology, 39, 499–509
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Digital.CSIC. Repositorio Institucional del CSIC
instname
Nature Biotechnology

13 pages, 5 figures, supplementary information https://doi.org/10.1038/s41587-020-0718-6.-- Data availability: All available metagenomic data, bins and annotations are available through the IMG/M portal (https://img.jgi.doe.gov/). Bulk download for t

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=doi_dedup___::7f489bf141441058aac3ad097dee1c4e
https://www.nature.com/articles/s41587-020-0718-6#citeas

Corrigendum: Genome data provides high support for generic boundaries in Burkholderia Sensu Lato [Front. Microbiol. 8, (2017), (1154)] doi: 10.3389/fmicb.2017.01154

Autor: Beukes, CW, Palmer, M, Manyaka, P, Chan, WY, Avontuur, JR, van Zyl, E, Huntemann, M, Clum, A, Pillay, M, Palaniappan, K, Varghese, N, Mikhailova, N, Stamatis, D, Reddy, TBK, Daum, C, Shapiro, N, Markowitz, V, Ivanova, N, Kyrpides, N, Woyke, T, Blom, J, Whitman, WB, Venter, SN, Steenkamp, ET

Publikováno v: Beukes, CW; Palmer, M; Manyaka, P; Chan, WY; Avontuur, JR; van Zyl, E; et al.(2018). Corrigendum: Genome data provides high support for generic boundaries in Burkholderia Sensu Lato [Front. Microbiol. 8, (2017), (1154)] doi: 10.3389/fmicb.2017.01154. Frontiers in Microbiology, 9(MAR). doi: 10.3389/fmicb.2018.00373. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/5t8106hv

© 2018 Beukes, Palmer, Manyaka, Chan, Avontuur, van Zyl, Huntemann, Clum, Pillay, Palaniappan, Varghese, Mikhailova, Stamatis, Reddy, Daum, Shapiro, Markowitz, Ivanova, Kyrpides, Woyke, Blom, Whitman, Venter and Steenkamp. A corrigendum on Genome Da

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::d2b63ed7a0e5c1a4025c6203f39d8a6b
http://www.escholarship.org/uc/item/5t8106hv

Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium

Autor: Rojas-Rojas, FU, Tapia-García, EY, Maymon, M, Humm, E, Huntemann, M, Clum, A, Pillay, M, Palaniappan, K, Varghese, N, Mikhailova, N, Stamatis, D, Reddy, TBK, Markowitz, V, Ivanova, N, Kyrpides, N, Woyke, T, Shapiro, N, Hirsch, AM, Estrada-de los Santos, P

Publikováno v: Rojas-Rojas, FU; Tapia-García, EY; Maymon, M; Humm, E; Huntemann, M; Clum, A; et al.(2017). Draft genome of Paraburkholderia caballeronis TNe-841T, a free-living, nitrogen-fixing, tomato plant-associated bacterium. Standards in Genomic Sciences, 12(1), 80. doi: 10.1186/s40793-017-0294-7. UCLA: Retrieved from: http://www.escholarship.org/uc/item/766964v8

© 2017 The Author(s). Paraburkholderiacaballeronis is a plant-associated bacterium. Strain TNe-841Twas isolated from the rhizosphere of tomato (Solanum lycopersicum L. var. lycopersicum) growing in Nepantla Mexico State. Initially this bacterium was

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::8ac728f3b1f99471e42a6fd3eb945309
http://www.escholarship.org/uc/item/766964v8

High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T(DSM 29698)

Autor: Patil, Y, Müller, N, Schink, B, Whitman, WB, Huntemann, M, Clum, A, Pillay, M, Palaniappan, K, Varghese, N, Mikhailova, N, Stamatis, D, Reddy, TBK, Daum, C, Shapiro, N, Ivanova, N, Kyrpides, N, Woyke, T, Junghare, M

Publikováno v: Patil, Y; Müller, N; Schink, B; Whitman, WB; Huntemann, M; Clum, A; et al.(2017). High-quality-draft genome sequence of the fermenting bacterium Anaerobium acetethylicum type strain GluBS11T(DSM 29698). Standards in Genomic Sciences, 12(1). doi: 10.1186/s40793-017-0236-4. Lawrence Berkeley National Laboratory: Retrieved from: http://www.escholarship.org/uc/item/2b22m9pw

© 2017 The Author(s). Anaerobium acetethylicum strain GluBS11Tbelongs to the family Lachnospiraceae within the order Clostridiales. It is a Gram-positive, non-motile and strictly anaerobic bacterium isolated from biogas slurry that was originally en

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od_______325::0a7b798ed4dd94077dfd651467f9e2ff
http://www.escholarship.org/uc/item/2b22m9pw