Zobrazeno 1 - 10
of 13
pro vyhledávání: '"Kyle S Skalenko"'
Autor:
John S Favate, Kyle S Skalenko, Eric Chiles, Xiaoyang Su, Srujana Samhita Yadavalli, Premal Shah
Publikováno v:
eLife, Vol 12 (2023)
Changes in an organism’s environment, genome, or gene expression patterns can lead to changes in its metabolism. The metabolic phenotype can be under selection and contributes to adaptation. However, the networked and convoluted nature of an organi
Externí odkaz:
https://doaj.org/article/eb979141f9664a8884256977e7455289
Autor:
Sergey Y Druzhinin, Ngat T Tran, Kyle S Skalenko, Seth R Goldman, Jared G Knoblauch, Simon L Dove, Bryce E Nickels
Publikováno v:
PLoS Genetics, Vol 11, Iss 7, p e1005348 (2015)
Transcription initiation that involves the use of a 2- to ~4-nt oligoribonucleotide primer, "primer-dependent initiation," (PDI) has been shown to be widely prevalent at promoters of genes expressed during the stationary phase of growth in Escherichi
Externí odkaz:
https://doaj.org/article/8ef4feb387c242d18ee98d486b20c72e
Autor:
John S. Favate, Kyle S. Skalenko, Eric Chiles, Xiaoyang Su, Srujana S. Yadavalli, Premal Shah
Changes in an organism’s environment, genome, or gene expression patterns ultimately lead to changes in its metabolome. The metabolic phenotype can be under selection and is known to contribute to adaptation. However, the networked and convoluted n
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::34eecff8da0841a55c88186fa4f9b82b
https://doi.org/10.7554/elife.87039
https://doi.org/10.7554/elife.87039
Autor:
Chirangini Pukhrambam, Vadim Molodtsov, Mahdi Kooshkbaghi, Ammar Tareen, Hoa Vu, Kyle S. Skalenko, Min Su, Zhou Yin, Jared T. Winkelman, Justin B. Kinney, Richard H. Ebright, Bryce E. Nickels
Publikováno v:
Proceedings of the National Academy of Sciences of the United States of America. 119(23)
In σ-dependent transcriptional pausing, the transcription initiation factor σ, translocating with RNA polymerase (RNAP), makes sequence-specific protein-DNA interactions with a promoter-like sequence element in the transcribed region, inducing paus
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::9a9ce08beed7340bc479f97b438c74d1
https://pubmed.ncbi.nlm.nih.gov/35653571
https://pubmed.ncbi.nlm.nih.gov/35653571
Autor:
Margaux Thiry, Ayushi Agrawal, Kyle S. Skalenko, Neelan Sivaneri, Shishir P. S. Chundawat, Chandra Kanth Bandi
Publikováno v:
ACS Synthetic Biology. 10:682-689
Detection of azide-tagged biomolecules (e.g., azido sugars) inside living cells using "click" chemistry has been revolutionary to the field of chemical biology. However, we currently still lack suitable synthetic biology tools to autonomously and rap
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::ef2041c20e345110a55ab0542a81e22e
https://doi.org/10.1021/acssynbio.0c00449
https://doi.org/10.1021/acssynbio.0c00449
Autor:
Kyle S. Skalenko, John S. Favate, Premal Shah, Alexander L. Cope, Srujana S. Yadavalli, Sangeevan Vellappan
Publikováno v:
Methods in Molecular Biology ISBN: 9781071618509
The emergence of ribosome profiling as a tool for measuring the translatome has provided researchers with valuable insights into the post-transcriptional regulation of gene expression. Despite the biological insights and technical improvements made s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::bc3b3c2ecc0a003bbcccb8b420a922de
https://doi.org/10.1007/978-1-0716-1851-6_5
https://doi.org/10.1007/978-1-0716-1851-6_5
Autor:
Alexander L, Cope, Sangeevan, Vellappan, John S, Favate, Kyle S, Skalenko, Srujana S, Yadavalli, Premal, Shah
Publikováno v:
Methods in molecular biology (Clifton, N.J.). 2404
The emergence of ribosome profiling as a tool for measuring the translatome has provided researchers with valuable insights into the post-transcriptional regulation of gene expression. Despite the biological insights and technical improvements made s
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::9c4f18274ff173b57a0c5eef14696242
https://pubmed.ncbi.nlm.nih.gov/34694605
https://pubmed.ncbi.nlm.nih.gov/34694605
Autor:
Kyle S, Skalenko, Lingting, Li, Yuanchao, Zhang, Irina O, Vvedenskaya, Jared T, Winkelman, Alexander L, Cope, Deanne M, Taylor, Premal, Shah, Richard H, Ebright, Justin B, Kinney, Yu, Zhang, Bryce E, Nickels
Publikováno v:
Proc Natl Acad Sci U S A
Chemical modifications of RNA 5′-ends enable “epitranscriptomic” regulation, influencing multiple aspects of RNA fate. In transcription initiation, a large inventory of substrates compete with nucleoside triphosphates for use as initiating enti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=pmid________::a83e90107ae3e84ab3625e339457735d
https://pubmed.ncbi.nlm.nih.gov/34187896
https://pubmed.ncbi.nlm.nih.gov/34187896
Autor:
Lingting Li, Yuanchao Zhang, Irina O. Vvedenskaya, Bryce E. Nickels, Deanne Taylor, Kyle S. Skalenko, Premal Shah, Yu Zhang, Richard H. Ebright, Jared T. Winkelman, Justin B. Kinney, Alexander L. Cope
Publikováno v:
Proceedings of the National Academy of Sciences. 118
Chemical modifications of RNA 5'-ends enable "epitranscriptomic" regulation, influencing multiple aspects of RNA fate. In transcription initiation, a large inventory of substrates compete with nucleoside triphosphates for use as initiating entities,
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::d673f5619b1c52f0f2ad2c28c4e13fec
https://doi.org/10.1073/pnas.2106388118
https://doi.org/10.1073/pnas.2106388118
Autor:
Justin B. Kinney, Richard H. Ebright, Alexander L. Cope, Kyle S. Skalenko, Deanne Taylor, Bryce E. Nickels, Lingting Li, Yuanchao Zhang, Irina O. Vvedenskaya, Yu Zhang, Premal Shah, Jared T. Winkelman
Chemical modifications of RNA 5′ ends enable “epitranscriptomic” regulation, influencing multiple aspects of RNA fate. In transcription initiation, a large inventory of substrates compete with nucleoside triphosphates (NTPs) for use as initiati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::f29451834a976c4596784163bb392168
https://doi.org/10.1101/2021.04.06.438613
https://doi.org/10.1101/2021.04.06.438613