The molecular basis of differential host responses to avian influenza viruses in avian species with differing susceptibility

Autor: Morris KM, Mishra A, Raut AA, Gaunt ER, Borowska D, Kuo RI, Wang B, Vijayakumar P, Chingtham S, Dutta R, Baillie K, Digard P, Vervelde L, Burt DW and Smith J

Introduction:Highly pathogenic avian influenza (HPAI) viruses, such as H5N1, continue to pose a serious threat to animal agriculture, wildlife and to public health. Controlling and mitigating this disease in domestic birds requires a better understan

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=od______2659::0881a8126d676e79fdb432af30eb1b83
https://zenodo.org/record/8135698

Corrigendum: The molecular basis of differential host responses to avian influenza viruses in avian species with differing susceptibility.

Autor: Morris KM; The Roslin Institute and R(D)SVS, The University of Edinburgh, Edinburgh, United Kingdom., Mishra A; National Institute of High Security Animal Diseases, Indian Council of Agricultural Research, Bhopal, India., Raut AA; National Institute of High Security Animal Diseases, Indian Council of Agricultural Research, Bhopal, India., Gaunt ER; The Roslin Institute and R(D)SVS, The University of Edinburgh, Edinburgh, United Kingdom., Borowska D; The Roslin Institute and R(D)SVS, The University of Edinburgh, Edinburgh, United Kingdom., Kuo RI; The Roslin Institute and R(D)SVS, The University of Edinburgh, Edinburgh, United Kingdom., Wang B; The Roslin Institute and R(D)SVS, The University of Edinburgh, Edinburgh, United Kingdom., Vijayakumar P; National Institute of High Security Animal Diseases, Indian Council of Agricultural Research, Bhopal, India., Chingtham S; National Institute of High Security Animal Diseases, Indian Council of Agricultural Research, Bhopal, India., Dutta R; National Institute of High Security Animal Diseases, Indian Council of Agricultural Research, Bhopal, India., Baillie K; The Roslin Institute and R(D)SVS, The University of Edinburgh, Edinburgh, United Kingdom., Digard P; The Roslin Institute and R(D)SVS, The University of Edinburgh, Edinburgh, United Kingdom., Vervelde L; The Roslin Institute and R(D)SVS, The University of Edinburgh, Edinburgh, United Kingdom., Burt DW; The Roslin Institute and R(D)SVS, The University of Edinburgh, Edinburgh, United Kingdom., Smith J; The Roslin Institute and R(D)SVS, The University of Edinburgh, Edinburgh, United Kingdom.

Publikováno v: Frontiers in cellular and infection microbiology [Front Cell Infect Microbiol] 2023 Apr 04; Vol. 13, pp. 1194878. Date of Electronic Publication: 2023 Apr 04 (Print Publication: 2023).

The swan genome and transcriptome, it is not all black and white.

Autor: Karawita AC; School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia.; Commonwealth Scientific and Industrial Research Organisation, Australian Centre for Disease Preparedness, 5 Portarlington Road, Geelong, VIC, 3220, Australia., Cheng Y; School of Life and Environmental Sciences, The University of Sydney, Sydney, NSW, 2006, Australia., Chew KY; School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia., Challagulla A; Commonwealth Scientific and Industrial Research Organisation, Australian Centre for Disease Preparedness, 5 Portarlington Road, Geelong, VIC, 3220, Australia., Kraus R; Department of Migration, Max Planck Institute of Animal Behavior, Radolfzell, 78315, Germany.; Department of Biology, University of Konstanz, Konstanz, 78457, Germany., Mueller RC; Department of Migration, Max Planck Institute of Animal Behavior, Radolfzell, 78315, Germany.; Department of Biology, University of Konstanz, Konstanz, 78457, Germany., Tong MZW; School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia., Hulme KD; School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia., Bielefeldt-Ohmann H; School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia., Steele LE; School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia., Wu M; School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia., Sng J; School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia., Noye E; School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia., Bruxner TJ; Institute for Molecular Bioscience, The University of Queensland, St Lucia, QLD, 4072, Australia., Au GG; Commonwealth Scientific and Industrial Research Organisation, Australian Centre for Disease Preparedness, 5 Portarlington Road, Geelong, VIC, 3220, Australia., Lowther S; Commonwealth Scientific and Industrial Research Organisation, Australian Centre for Disease Preparedness, 5 Portarlington Road, Geelong, VIC, 3220, Australia., Blommaert J; Department of Organismal Biology - Systematic Biology, Evolutionary Biology Centre, Uppsala University, Science for Life Laboratory, Uppsala, 752 36, Sweden.; The New Zealand Institute for Plant & Food Research Ltd, Nelson, 7010, New Zealand., Suh A; Department of Organismal Biology - Systematic Biology, Evolutionary Biology Centre, Uppsala University, Science for Life Laboratory, Uppsala, 752 36, Sweden.; School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, NR4 7TU, UK., McCauley AJ; Commonwealth Scientific and Industrial Research Organisation, Australian Centre for Disease Preparedness, 5 Portarlington Road, Geelong, VIC, 3220, Australia., Kaur P; School of Agriculture and Environment, The University of Western Australia, Perth, WA, 6009, Australia., Dudchenko O; The Centre for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.; Centre for Theoretical Biological Physics and Department of Computer Science, Rice University, Houston, TX, 77030, USA., Aiden E; School of Agriculture and Environment, The University of Western Australia, Perth, WA, 6009, Australia.; The Centre for Genome Architecture, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.; Centre for Theoretical Biological Physics and Department of Computer Science, Rice University, Houston, TX, 77030, USA.; Broad Institute of MIT and Harvard, Cambridge, MA, 02139, USA.; Shanghai Institute for Advanced Immunochemical Studies, ShanghaiTech, Pudong, 201210, China., Fedrigo O; The Vertebrate Genome Laboratory, The Rockefeller University, NY, 10065, USA., Formenti G; The Vertebrate Genome Laboratory, The Rockefeller University, NY, 10065, USA., Mountcastle J; The Vertebrate Genome Laboratory, The Rockefeller University, NY, 10065, USA., Chow W; Tree of Life, Welcome Sanger Institute, Cambridge, CB10 1SA, UK., Martin FJ; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Ogeh DN; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK., Thiaud-Nissen F; National Centre for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA., Howe K; Tree of Life, Welcome Sanger Institute, Cambridge, CB10 1SA, UK., Tracey A; Tree of Life, Welcome Sanger Institute, Cambridge, CB10 1SA, UK., Smith J; The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, UK., Kuo RI; The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush Campus, Midlothian, EH25 9RG, UK., Renfree MB; School of Biosciences, The University of Melbourne, Melbourne, VIC, 3052, Australia., Kimura T; Faculty of Veterinary Medicine, Hokkaido University, Sapporo, Hokkaido, 060-0818, Japan., Sakoda Y; Faculty of Veterinary Medicine, Hokkaido University, Sapporo, Hokkaido, 060-0818, Japan., McDougall M; New Zealand Fish & Game - Eastern Region, Rotorua, 3046, New Zealand., Spencer HG; Department of Zoology, University of Otago, Dunedin, 9054, New Zealand., Pyne M; Currumbin Wildlife Sanctuary, Currumbin, QLD, 4223, Australia., Tolf C; Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, SE-391 82, Sweden., Waldenström J; Centre for Ecology and Evolution in Microbial Model Systems (EEMiS), Linnaeus University, Kalmar, SE-391 82, Sweden., Jarvis ED; The Vertebrate Genome Laboratory, The Rockefeller University, NY, 10065, USA., Baker ML; Commonwealth Scientific and Industrial Research Organisation, Australian Centre for Disease Preparedness, 5 Portarlington Road, Geelong, VIC, 3220, Australia., Burt DW; School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia., Short KR; School of Chemistry and Molecular Biosciences, The University of Queensland, St Lucia, QLD, 4072, Australia. k.short@uq.edu.au.

Publikováno v: Genome biology [Genome Biol] 2023 Jan 23; Vol. 24 (1), pp. 13. Date of Electronic Publication: 2023 Jan 23.

A high-quality genome and comparison of short- versus long-read transcriptome of the palaearctic duck Aythya fuligula (tufted duck).

Autor: Mueller RC; Department of Migration, Max Planck Institute of Animal Behavior, Radolfzell, 78315, Germany.; Department of Biology, University of Konstanz, Konstanz, 78457, Germany., Ellström P; Department of Medical Sciences, Zoonosis Science Center, Uppsala University, Uppsala, SE-75185, Sweden., Howe K; Tree of Life, Wellcome Sanger Institute, Cambridge CB10 1SA, UK., Uliano-Silva M; Tree of Life, Wellcome Sanger Institute, Cambridge CB10 1SA, UK., Kuo RI; The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, UK., Miedzinska K; The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, UK., Warr A; The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, UK., Fedrigo O; Vertebrate Genome Laboratory, The Rockefeller University, New York, 10065, NY., Haase B; Vertebrate Genome Laboratory, The Rockefeller University, New York, 10065, NY., Mountcastle J; Vertebrate Genome Laboratory, The Rockefeller University, New York, 10065, NY., Chow W; Tree of Life, Wellcome Sanger Institute, Cambridge CB10 1SA, UK., Torrance J; Tree of Life, Wellcome Sanger Institute, Cambridge CB10 1SA, UK., Wood JMD; Tree of Life, Wellcome Sanger Institute, Cambridge CB10 1SA, UK., Järhult JD; Department of Medical Sciences, Zoonosis Science Center, Uppsala University, Uppsala, SE-75185, Sweden., Naguib MM; Department of Medical Biochemistry and Microbiology, Zoonosis Science Center, Uppsala University, Uppsala, 75237, Sweden., Olsen B; Department of Medical Sciences, Zoonosis Science Center, Uppsala University, Uppsala, SE-75185, Sweden., Jarvis ED; Vertebrate Genome Laboratory and HHMI, The Rockefeller University, New York, 10065, NY., Smith J; The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, UK., Eöry L; The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian EH25 9RG, UK., Kraus RHS; Department of Migration, Max Planck Institute of Animal Behavior, Radolfzell, 78315, Germany.; Department of Biology, University of Konstanz, Konstanz, 78457, Germany.

Publikováno v: GigaScience [Gigascience] 2021 Dec 20; Vol. 10 (12).

Avian Immunome DB: an example of a user-friendly interface for extracting genetic information.

Autor: Mueller RC; Department of Migration, Max Planck Institute of Animal Behavior, Am Obstberg, 78315, Radolfzell, Germany. rmueller@ab.mpg.de.; Department of Biology, University of Konstanz, Universitaetsstrasse 10, 78464, Konstanz, Germany. rmueller@ab.mpg.de., Mallig N; Department of Migration, Max Planck Institute of Animal Behavior, Am Obstberg, 78315, Radolfzell, Germany.; Department of Biology, University of Konstanz, Universitaetsstrasse 10, 78464, Konstanz, Germany.; HTWG Konstanz - University of Applied Sciences, Alfred-Wachtel-Str. 8, 78462, Konstanz, Germany., Smith J; The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, Roslin, EH25 9RG, UK., Eöry L; The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, Roslin, EH25 9RG, UK., Kuo RI; The Roslin Institute and Royal (Dick) School of Veterinary Studies, University of Edinburgh, Easter Bush, Midlothian, Roslin, EH25 9RG, UK., Kraus RHS; Department of Migration, Max Planck Institute of Animal Behavior, Am Obstberg, 78315, Radolfzell, Germany.; Department of Biology, University of Konstanz, Universitaetsstrasse 10, 78464, Konstanz, Germany.

Publikováno v: BMC bioinformatics [BMC Bioinformatics] 2020 Nov 12; Vol. 21 (1), pp. 502. Date of Electronic Publication: 2020 Nov 12.