Zobrazeno 1 - 10
of 14
pro vyhledávání: '"Kun D. Huang"'
Autor:
Paolo Manghi, Aitor Blanco-Míguez, Serena Manara, Amir NabiNejad, Fabio Cumbo, Francesco Beghini, Federica Armanini, Davide Golzato, Kun D. Huang, Andrew M. Thomas, Gianmarco Piccinno, Michal Punčochář, Moreno Zolfo, Till R. Lesker, Marius Bredon, Julien Planchais, Jeremy Glodt, Mireia Valles-Colomer, Omry Koren, Edoardo Pasolli, Francesco Asnicar, Till Strowig, Harry Sokol, Nicola Segata
Publikováno v:
Cell Reports, Vol 42, Iss 5, Pp 112464- (2023)
Summary: Mouse models are key tools for investigating host-microbiome interactions. However, shotgun metagenomics can only profile a limited fraction of the mouse gut microbiome. Here, we employ a metagenomic profiling method, MetaPhlAn 4, which expl
Externí odkaz:
https://doaj.org/article/408e6ebd6fcc4b37b16606edb4ac67d1
Autor:
Lena Granehäll, Kun D. Huang, Adrian Tett, Paolo Manghi, Alice Paladin, Niall O’Sullivan, Omar Rota-Stabelli, Nicola Segata, Albert Zink, Frank Maixner
Publikováno v:
Microbiome, Vol 9, Iss 1, Pp 1-18 (2021)
Abstract Background Dental calculus (mineralised dental plaque) preserves many types of microfossils and biomolecules, including microbial and host DNA, and ancient calculus are thus an important source of information regarding our ancestral human or
Externí odkaz:
https://doaj.org/article/a563d0881e62459f83763dce7b6253f9
Autor:
Nicolai Karcher, Edoardo Pasolli, Francesco Asnicar, Kun D. Huang, Adrian Tett, Serena Manara, Federica Armanini, Debbie Bain, Sylvia H. Duncan, Petra Louis, Moreno Zolfo, Paolo Manghi, Mireia Valles-Colomer, Roberta Raffaetà, Omar Rota-Stabelli, Maria Carmen Collado, Georg Zeller, Daniel Falush, Frank Maixner, Alan W. Walker, Curtis Huttenhower, Nicola Segata
Publikováno v:
Genome Biology, Vol 21, Iss 1, Pp 1-27 (2020)
Abstract Background Eubacterium rectale is one of the most prevalent human gut bacteria, but its diversity and population genetics are not well understood because large-scale whole-genome investigations of this microbe have not been carried out. Resu
Externí odkaz:
https://doaj.org/article/f32fcb210c9e4d5b862390f89e7cb781
Autor:
Mireia Valles-Colomer, Aitor Blanco-Míguez, Paolo Manghi, Francesco Asnicar, Leonard Dubois, Davide Golzato, Federica Armanini, Fabio Cumbo, Kun D. Huang, Serena Manara, Giulia Masetti, Federica Pinto, Elisa Piperni, Michal Punčochář, Liviana Ricci, Moreno Zolfo, Olivia Farrant, Adriana Goncalves, Marta Selma-Royo, Ana G. Binetti, Jimmy E. Becerra, Bei Han, John Lusingu, John Amuasi, Loredana Amoroso, Alessia Visconti, Claire M. Steves, Mario Falchi, Michele Filosi, Adrian Tett, Anna Last, Qian Xu, Nan Qin, Huanlong Qin, Jürgen May, Daniel Eibach, Maria Valeria Corrias, Mirco Ponzoni, Edoardo Pasolli, Tim D. Spector, Enrico Domenici, Maria Carmen Collado, Nicola Segata
The human microbiome is an integral component of the human body and a co-determinant of several health conditions1,2. However, the extent to which interpersonal relations shape the individual genetic makeup of the microbiome and its transmission with
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::b7438e9a3141ff49440bb8cbdbd0ba4e
https://www.nature.com/articles/s41586-022-05620-1#citeas
https://www.nature.com/articles/s41586-022-05620-1#citeas
Autor:
Aitor Blanco-Míguez, Francesco Beghini, Fabio Cumbo, Lauren J. McIver, Kelsey N. Thompson, Moreno Zolfo, Paolo Manghi, Leonard Dubois, Kun D. Huang, Andrew Maltez Thomas, William A. Nickols, Gianmarco Piccinno, Elisa Piperni, Michal Punčochář, Mireia Valles-Colomer, Adrian Tett, Francesca Giordano, Richard Davies, Jonathan Wolf, Sarah E. Berry, Tim D. Spector, Eric A. Franzosa, Edoardo Pasolli, Francesco Asnicar, Curtis Huttenhower, Nicola Segata
Publikováno v:
Nature Biotechnology
Metagenomic assembly enables new organism discovery from microbial communities, but it can only capture few abundant organisms from most metagenomes. Here we present MetaPhlAn 4, which integrates information from metagenome assemblies and microbial i
Autor:
Serena Manara, Marta Selma-Royo, Kun D. Huang, Francesco Asnicar, Federica Armanini, Aitor Blanco-Miguez, Fabio Cumbo, Davide Golzato, Paolo Manghi, Federica Pinto, Mireia Valles-Colomer, Loredana Amoroso, Maria Valeria Corrias, Mirco Ponzoni, Roberta Raffaetà, Raul Cabrera-Rubio, Mari Olcina, Edoardo Pasolli, Maria Carmen Collado, Nicola Segata
The human microbiome seeding starts at birth, when pioneer microbes are acquired mainly from the mother. Mode of delivery, antibiotic prophylaxis, and feeding method have been studied as modulators of mother-to-infant microbiome transmission, but oth
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c5c5341394d48f07b896fcafb12828e5
https://hdl.handle.net/11588/919127
https://hdl.handle.net/11588/919127
Autor:
Aitor Blanco-Miguez, Francesco Beghini, Fabio Cumbo, Lauren J. McIver, Kelsey N. Thompson, Moreno Zolfo, Paolo Manghi, Leonard Dubois, Kun D. Huang, Andrew Maltez Thomas, Gianmarco Piccinno, Elisa Piperni, Michal Punčochář, Mireia Valles-Colomer, Adrian Tett, Francesca Giordano, Richard Davies, Jonathan Wolf, Sarah E. Berry, Tim D. Spector, Eric A. Franzosa, Edoardo Pasolli, Francesco Asnicar, Curtis Huttenhower, Nicola Segata
Metagenomic assembly enables novel organism discovery from microbial communities, but from most metagenomes it can only capture few abundant organisms. Here, we present a method - MetaPhlAn 4 - to integrate information from both metagenome assemblies
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::b376050ffa0e3cd952c48beffc30ad7d
https://doi.org/10.1101/2022.08.22.504593
https://doi.org/10.1101/2022.08.22.504593
Autor:
Ulrike Kusebauch, Kerstin Kowarik, Omar Rota-Stabelli, Mohamed S. Sarhan, Aitor Blanco-Míguez, Kun D. Huang, Albert Zink, Michael R. Hoopmann, Jan Cemper-Kiesslich, Paolo Manghi, Seamus R. Morrone, Thomas Rattei, Nicola Segata, Robert L. Moritz, Alexander Schoenafinger, Stefania Zingale, Adrian Tett, Frank Maixner, Wilfried Rosendahl, Klaus Oeggl, Hans Reschreiter
Publikováno v:
Current Biology
Summary We subjected human paleofeces dating from the Bronze Age to the Baroque period (18th century AD) to in-depth microscopic, metagenomic, and proteomic analyses. The paleofeces were preserved in the underground salt mines of the UNESCO World Her
Autor:
Humberto García-Ortiz, Jacob M. Luber, Alexander Hübner, Nicola Segata, Aleksandar Kostic, Marsha C. Wibowo, Angélica Martínez-Hernández, Steven A. LeBlanc, Philipp Kirstahler, Francis E. Smiley, Christina Warinner, Sonia Arora Ballal, Omar Rota-Stabelli, Kun D. Huang, Julia Russ, Richard N. Arnold, Karl J. Reinhard, Sünje Johanna Pamp, Frank Maixner, Lorena Orozco, Samuel Zimmerman, Braden T. Tierney, Cecilia Contreras-Cubas, Francisco Barajas-Olmos, Zhen Yang, Meradeth Snow, Maxime Borry, Tre Blohm
Publikováno v:
Wibowo, M C, Yang, Z, Borry, M, Hübner, A, Huang, K D, Tierney, B T, Zimmerman, S, Barajas-Olmos, F, Contreras-Cubas, C, García-Ortiz, H, Martínez-Hernández, A, Luber, J M, Kirstahler, P, Blohm, T, Smiley, F E, Arnold, R, Ballal, S A, Pamp, S J, Russ, J, Maixner, F, Rota-Stabelli, O, Segata, N, Reinhard, K, Orozco, L, Warinner, C, Snow, M, LeBlanc, S & Kostic, A D 2021, ' Reconstruction of ancient microbial genomes from the human gut ', Nature, vol. 594, pp. 234–239 . https://doi.org/10.1038/s41586-021-03532-0
Nature
Nature
Loss of gut microbial diversity1–6 in industrial populations is associated with chronic diseases7, underscoring the importance of studying our ancestral gut microbiome. However, relatively little is known about the composition of pre-industrial gut
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ce8d1e4efb4731d9281d80f37b5720c6
https://orbit.dtu.dk/en/publications/e7f12aee-bb87-4996-967e-20ae62b3cc0e
https://orbit.dtu.dk/en/publications/e7f12aee-bb87-4996-967e-20ae62b3cc0e
Autor:
Federica Armanini, John Lusingu, Maria Carmen Collado, Francesco Asnicar, Paolo Manghi, Kevin S. Bonham, Thomas Rattei, Francesca De Filippis, Nicola Segata, Frank Maixner, Dan R. Littman, Omar Rota-Stabelli, Richard Bonneau, Lars Engstrand, Adrian Tett, Cara Magnabosco, Nicolai Karcher, Albert Zink, Kun D. Huang, Moreno Zolfo, Karl J. Reinhard, Danilo Ercolini, Edoardo Pasolli, Hannah Fehlner-Peach, John H Amuasi, Daniel Eibach, Curtis Huttenhower, Fredrik Boulund
Prevotella copri is a common inhabitant of the human gut. Interest in P. copri has gathered pace due to conflicting reports on whether it is beneficial or detrimental to health. In a cross-continent meta-analysis exploiting >6,500 available metagenom
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::374e66b1f2b383e512dbb92166c2d906
https://doi.org/10.1101/600593
https://doi.org/10.1101/600593