Zobrazeno 1 - 10
of 15
pro vyhledávání: '"Kumaraswamy N. Chitrala"'
Autor:
Vinay Jain, Divyashri Baraniya, Doaa E. El-Hadedy, Tsute Chen, Michael Slifker, Fadhl Alakwaa, Kathy Q. Cai, Kumaraswamy N. Chitrala, Christopher Fundakowski, Nezar N. Al-Hebshi
Publikováno v:
Cancer Research Communications. 3:807-820
Studies on the microbiome of oral squamous cell carcinoma (OSCC) have been limited to 16S rRNA gene sequencing. Here, laser microdissection coupled with brute-force, deep metatranscriptome sequencing was employed to simultaneously characterize the mi
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::095bcdfd9184fe22d6c60d6944f66e7a
https://doi.org/10.1158/2767-9764.crc-22-0349
https://doi.org/10.1158/2767-9764.crc-22-0349
Autor:
Nezar N. Al-Hebshi, Christopher Fundakowski, Kumaraswamy N. Chitrala, Kathy Q. Cai, Fadhl Alakwaa, Michael Slifker, Tsute Chen, Doaa E. El-Hadedy, Divyashri Baraniya, Vinay Jain
Host gene-microbial genus global_correlations, rs>=0.6 and FDR=
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5aac6abb3f721809591903c85f180764
https://doi.org/10.1158/2767-9764.22779525.v1
https://doi.org/10.1158/2767-9764.22779525.v1
Autor:
Nezar N. Al-Hebshi, Christopher Fundakowski, Kumaraswamy N. Chitrala, Kathy Q. Cai, Fadhl Alakwaa, Michael Slifker, Tsute Chen, Doaa E. El-Hadedy, Divyashri Baraniya, Vinay Jain
Preliminary in vitro experimental validation in SCC25 cells. A,Cutibacterium acnes and the MYC gene were chosen for this experiment based on their strong correlation in the sequencing data. rs, Spearman correlation coefficient; CLR, centered log rati
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::c32c6974100f761257b876b232504f6a
https://doi.org/10.1158/2767-9764.22779534.v1
https://doi.org/10.1158/2767-9764.22779534.v1
Autor:
Nezar N. Al-Hebshi, Christopher Fundakowski, Kumaraswamy N. Chitrala, Kathy Q. Cai, Fadhl Alakwaa, Michael Slifker, Tsute Chen, Doaa E. El-Hadedy, Divyashri Baraniya, Vinay Jain
HL expression by Cutibacterium acnes. Relative abundance of HL transcripts in individual samples. The transcripts were exclusively contributed by Cutibacterium acnes based on HUMAnN 3.0 results.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0edd7c3e68b6d2e18a3a234992741c32
https://doi.org/10.1158/2767-9764.22779540.v1
https://doi.org/10.1158/2767-9764.22779540.v1
Autor:
Nezar N. Al-Hebshi, Christopher Fundakowski, Kumaraswamy N. Chitrala, Kathy Q. Cai, Fadhl Alakwaa, Michael Slifker, Tsute Chen, Doaa E. El-Hadedy, Divyashri Baraniya, Vinay Jain
Microbial loads and transcriptional profiles. DNA extracted from the same cells as for RNA was used to determine bacterial, fungal, and archaeal loads in the samples relative to human β-actin gene by qPCR (A). Nonhuman, nonribosomal RNA sequences we
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::95825ff3d4aee2d5497514c131c8193e
https://doi.org/10.1158/2767-9764.22779546.v1
https://doi.org/10.1158/2767-9764.22779546.v1
Autor:
Nezar N. Al-Hebshi, Christopher Fundakowski, Kumaraswamy N. Chitrala, Kathy Q. Cai, Fadhl Alakwaa, Michael Slifker, Tsute Chen, Doaa E. El-Hadedy, Divyashri Baraniya, Vinay Jain
Host transcriptome. Sequences were mapped to human reference GRCh38 and quantified at the gene level using STAR aligner and HTSeq, respectively. DESeq2 was used to identify DEGs which are depicted in volcano plots for tumor versus adjacent normal (pa
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::77edc5a8bf12857af54bc9916cdd3d55
https://doi.org/10.1158/2767-9764.22779549.v1
https://doi.org/10.1158/2767-9764.22779549.v1
Autor:
Nezar N. Al-Hebshi, Christopher Fundakowski, Kumaraswamy N. Chitrala, Kathy Q. Cai, Fadhl Alakwaa, Michael Slifker, Tsute Chen, Doaa E. El-Hadedy, Divyashri Baraniya, Vinay Jain
Host differentially expressed genes and pathways by lymph node status
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::0bb4cdd2f0ac41539dd74184d65b2572
https://doi.org/10.1158/2767-9764.22779507.v1
https://doi.org/10.1158/2767-9764.22779507.v1
Autor:
Nezar N. Al-Hebshi, Christopher Fundakowski, Kumaraswamy N. Chitrala, Kathy Q. Cai, Fadhl Alakwaa, Michael Slifker, Tsute Chen, Doaa E. El-Hadedy, Divyashri Baraniya, Vinay Jain
Differentially abundant microbial features. Taxonomic and functional profiles obtained with HUMAnN 3.0 were CLR transformed and differential abundance analysis was performed with MaAsLin2 setting FDR cutoff to 0.05. A, Bar plots of the top differenti
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::2bca34fdb3b20e3d457be954db1855fa
https://doi.org/10.1158/2767-9764.22779543.v1
https://doi.org/10.1158/2767-9764.22779543.v1
Autor:
Nezar N. Al-Hebshi, Christopher Fundakowski, Kumaraswamy N. Chitrala, Kathy Q. Cai, Fadhl Alakwaa, Michael Slifker, Tsute Chen, Doaa E. El-Hadedy, Divyashri Baraniya, Vinay Jain
PDF document with Supplementary Figures 1-12
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::e0dd9851cbe04dd92f87c6304b8955f6
https://doi.org/10.1158/2767-9764.22651766.v1
https://doi.org/10.1158/2767-9764.22651766.v1
Autor:
Nezar N. Al-Hebshi, Christopher Fundakowski, Kumaraswamy N. Chitrala, Kathy Q. Cai, Fadhl Alakwaa, Michael Slifker, Tsute Chen, Doaa E. El-Hadedy, Divyashri Baraniya, Vinay Jain
Host pathways (GSEA genesets) correlating with microbial enzyme classes
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4de6a4118a9cfe8dde557296a62c3b35
https://doi.org/10.1158/2767-9764.22651754.v1
https://doi.org/10.1158/2767-9764.22651754.v1