Combining systems and synthetic biology for in vivo enzymology.

Autor: Castaño-Cerezo S; TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France. castanoc@insa-toulouse.fr., Chamas A; SPO, Université Montpellier, INRAE, Institut Agro Montpellier, Montpellier, France.; Department of Microbial Pathogenicity Mechanisms, Leibniz Institute for Natural Product Research and Infection Biology (HKI), Jena, Germany.; Cluster of Excellence Balance of the Microverse, Friedrich Schiller University Jena, Jena, Germany., Kulyk H; TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.; MetaboHUB-MetaToul, National Infrastructure of Metabolomics and Fluxomics, Toulouse, France., Treitz C; Systematic Proteome Research and Bioanalytics, Institute for Experimental Medicine, Christian-Albrechts-Universität zu Kiel, Kiel, Germany., Bellvert F; TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France.; MetaboHUB-MetaToul, National Infrastructure of Metabolomics and Fluxomics, Toulouse, France., Tholey A; Systematic Proteome Research and Bioanalytics, Institute for Experimental Medicine, Christian-Albrechts-Universität zu Kiel, Kiel, Germany., Galéote V; SPO, Université Montpellier, INRAE, Institut Agro Montpellier, Montpellier, France., Camarasa C; SPO, Université Montpellier, INRAE, Institut Agro Montpellier, Montpellier, France., Heux S; TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France., Garcia-Alles LF; TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France., Millard P; TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France. millard@insa-toulouse.fr.; MetaboHUB-MetaToul, National Infrastructure of Metabolomics and Fluxomics, Toulouse, France. millard@insa-toulouse.fr., Truan G; TBI, Université de Toulouse, CNRS, INRAE, INSA, Toulouse, France. truan@insa-toulouse.fr.

Publikováno v: The EMBO journal [EMBO J] 2024 Nov; Vol. 43 (21), pp. 5169-5185. Date of Electronic Publication: 2024 Sep 25.

Energy Resolved Mass Spectrometry for Interoperable Non-resonant Collisional Spectra in Metabolomics.

Autor: Hueber A; I2MC, Inserm, 31432 Toulouse, France.; IRSD, Université de Toulouse, INSERM, INRAE, INPENVT, 31024 Toulouse, France.; MetaboHUB-MetaToul, National Infrastructure of Metabolomics and Fluxomics, 31400 Toulouse, France., Kulyk H; MetaboHUB-MetaToul, National Infrastructure of Metabolomics and Fluxomics, 31400 Toulouse, France.; Toulouse Biotechnology Institute (TBI), Université de Toulouse, CNRS, INRAE, INSA, 31077 Toulouse, France., Damont A; Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé, MetaboHUB, 91191 Gif-sur-Yvette, France., Nicol E; Laboratoire de Chimie Moléculaire (LCM), CNRS, École Polytechnique, Institut Polytechnique de Paris, 91120 Palaiseau, France., Alves S; Sorbonne Université, Faculté des Sciences et de l'Ingénierie, Institut Parisien de Chimie Moléculaire (IPCM), 75005 Paris, France., Liuu S; Food Safety Laboratory, ANSES, 94701 Maisons-Alfort, France., Green M; Waters Corporation, Wilmslow SK9 4AX, United Kingdom., Bertrand-Michel J; I2MC, Inserm, 31432 Toulouse, France.; MetaboHUB-MetaToul, National Infrastructure of Metabolomics and Fluxomics, 31400 Toulouse, France., Cenac N; MetaboHUB-MetaToul, National Infrastructure of Metabolomics and Fluxomics, 31400 Toulouse, France., Fenaille F; Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé, MetaboHUB, 91191 Gif-sur-Yvette, France., Tabet JC; Université Paris-Saclay, CEA, INRAE, Département Médicaments et Technologies pour la Santé, MetaboHUB, 91191 Gif-sur-Yvette, France.; Sorbonne Université, Faculté des Sciences et de l'Ingénierie, Institut Parisien de Chimie Moléculaire (IPCM), 75005 Paris, France.

Publikováno v: Journal of the American Society for Mass Spectrometry [J Am Soc Mass Spectrom] 2024 May 01; Vol. 35 (5), pp. 834-838. Date of Electronic Publication: 2024 Apr 01.

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Metabolomics and modelling approaches for systems metabolic engineering.

Autor: Khanijou JK; Singapore Institute of Food and Biotechnology Innovation (SIFBI), Agency for Science, Technology and Research (ASTAR), Singapore 138673, Singapore., Kulyk H; Toulouse Biotechnology Institute, Bio & Chemical Engineering (TBI), Université de Toulouse, CNRS 5504 - INRA 792 - INSA, France.; MetaToul-MetaboHUB, National Infrastructure of Metabolomics & Fluxomics (ANR-11-INBS-0010), France., Bergès C; Toulouse Biotechnology Institute, Bio & Chemical Engineering (TBI), Université de Toulouse, CNRS 5504 - INRA 792 - INSA, France.; MetaToul-MetaboHUB, National Infrastructure of Metabolomics & Fluxomics (ANR-11-INBS-0010), France., Khoo LW; Singapore Institute of Food and Biotechnology Innovation (SIFBI), Agency for Science, Technology and Research (ASTAR), Singapore 138673, Singapore., Ng P; Singapore Institute of Food and Biotechnology Innovation (SIFBI), Agency for Science, Technology and Research (ASTAR), Singapore 138673, Singapore., Yeo HC; Bioinformatics Institute (BII), Agency for Science, Technology and Research (ASTAR), Singapore 138671, Singapore., Helmy M; Bioinformatics Institute (BII), Agency for Science, Technology and Research (ASTAR), Singapore 138671, Singapore.; Department of Computer Science, Lakehead University, ON, P7B 5E1, Canada., Bellvert F; Toulouse Biotechnology Institute, Bio & Chemical Engineering (TBI), Université de Toulouse, CNRS 5504 - INRA 792 - INSA, France.; MetaToul-MetaboHUB, National Infrastructure of Metabolomics & Fluxomics (ANR-11-INBS-0010), France., Chew W; Singapore Institute of Food and Biotechnology Innovation (SIFBI), Agency for Science, Technology and Research (ASTAR), Singapore 138673, Singapore., Selvarajoo K; Singapore Institute of Food and Biotechnology Innovation (SIFBI), Agency for Science, Technology and Research (ASTAR), Singapore 138673, Singapore.; Bioinformatics Institute (BII), Agency for Science, Technology and Research (ASTAR), Singapore 138671, Singapore.; Synthetic Biology for Clinical and Technological Innovation (SynCTI), National University of Singapore (NUS), Singapore 117456, Singapore.; School of Biological Sciences, Nanyang Technological University (NTU), Singapore 637551, Singapore.

Publikováno v: Metabolic engineering communications [Metab Eng Commun] 2022 Oct 15; Vol. 15, pp. e00209. Date of Electronic Publication: 2022 Oct 15 (Print Publication: 2022).

Glycerol suppresses glucose consumption in trypanosomes through metabolic contest.

Autor: Allmann S; Microbiologie Fondamentale et Pathogénicité, UMR 5234, Bordeaux University, CNRS, Bordeaux, France.; Centre de Résonance Magnétique des Systèmes Biologiques, UMR 5536, Bordeaux University, CNRS, Bordeaux, France., Wargnies M; Microbiologie Fondamentale et Pathogénicité, UMR 5234, Bordeaux University, CNRS, Bordeaux, France.; Centre de Résonance Magnétique des Systèmes Biologiques, UMR 5536, Bordeaux University, CNRS, Bordeaux, France., Plazolles N; Microbiologie Fondamentale et Pathogénicité, UMR 5234, Bordeaux University, CNRS, Bordeaux, France., Cahoreau E; Toulouse Biotechnology Institute, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France.; MetaToul-MetaboHUB, Toulouse, France., Biran M; Centre de Résonance Magnétique des Systèmes Biologiques, UMR 5536, Bordeaux University, CNRS, Bordeaux, France., Morand P; Centre de Résonance Magnétique des Systèmes Biologiques, UMR 5536, Bordeaux University, CNRS, Bordeaux, France., Pineda E; Microbiologie Fondamentale et Pathogénicité, UMR 5234, Bordeaux University, CNRS, Bordeaux, France., Kulyk H; Toulouse Biotechnology Institute, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France.; MetaToul-MetaboHUB, Toulouse, France., Asencio C; Microbiologie Fondamentale et Pathogénicité, UMR 5234, Bordeaux University, CNRS, Bordeaux, France., Villafraz O; Microbiologie Fondamentale et Pathogénicité, UMR 5234, Bordeaux University, CNRS, Bordeaux, France., Rivière L; Microbiologie Fondamentale et Pathogénicité, UMR 5234, Bordeaux University, CNRS, Bordeaux, France., Tetaud E; Microbiologie Fondamentale et Pathogénicité, UMR 5234, Bordeaux University, CNRS, Bordeaux, France., Rotureau B; Trypanosome Transmission Group, Trypanosome Cell Biology Unit, Department of Parasites and Insect Vectors, INSERM U1201, Institut Pasteur, Paris, France., Mourier A; Institute of Biochemistry and Genetics of the Cell (IBGC), CNRS, Bordeaux University, Bordeaux, France., Portais JC; Toulouse Biotechnology Institute, Université de Toulouse, CNRS, INRA, INSA, Toulouse, France.; MetaToul-MetaboHUB, Toulouse, France.; STROMALab, Université de Toulouse, INSERM U1031, EFS, INP-ENVT, UPS, Toulouse, France., Bringaud F; Microbiologie Fondamentale et Pathogénicité, UMR 5234, Bordeaux University, CNRS, Bordeaux, France.; Centre de Résonance Magnétique des Systèmes Biologiques, UMR 5536, Bordeaux University, CNRS, Bordeaux, France.

Publikováno v: PLoS biology [PLoS Biol] 2021 Aug 13; Vol. 19 (8), pp. e3001359. Date of Electronic Publication: 2021 Aug 13 (Print Publication: 2021).