Zobrazeno 1 - 10
of 31
pro vyhledávání: '"Kujin Tang"'
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-17 (2019)
Abstract Alignment-free methods, more time and memory efficient than alignment-based methods, have been widely used for comparing genome sequences or raw sequencing samples without assembly. However, in this study, we show that alignment-free dissimi
Externí odkaz:
https://doaj.org/article/c2b78009b83249cf82db3d2ff5275dda
Autor:
Andrzej Zielezinski, Hani Z. Girgis, Guillaume Bernard, Chris-Andre Leimeister, Kujin Tang, Thomas Dencker, Anna Katharina Lau, Sophie Röhling, Jae Jin Choi, Michael S. Waterman, Matteo Comin, Sung-Hou Kim, Susana Vinga, Jonas S. Almeida, Cheong Xin Chan, Benjamin T. James, Fengzhu Sun, Burkhard Morgenstern, Wojciech M. Karlowski
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-18 (2019)
Abstract Background Alignment-free (AF) sequence comparison is attracting persistent interest driven by data-intensive applications. Hence, many AF procedures have been proposed in recent years, but a lack of a clearly defined benchmarking consensus
Externí odkaz:
https://doaj.org/article/a27249eeddf848c9a0542d0528e3605a
Autor:
Kujin Tang, Jie Ren, Richard Cronn, David L. Erickson, Brook G. Milligan, Meaghan Parker-Forney, John L. Spouge, Fengzhu Sun
Publikováno v:
BMC Genomics, Vol 19, Iss 1, Pp 1-16 (2018)
Abstract Background The application of genomic data and bioinformatics for the identification of restricted or illegally-sourced natural products is urgently needed. The taxonomic identity and geographic provenance of raw and processed materials have
Externí odkaz:
https://doaj.org/article/d6e0e05cedf44c32a5876c07db37f74b
Publikováno v:
BMC Genomics, Vol 18, Iss S6, Pp 19-30 (2017)
Abstract Background Alignment-free sequence comparison using counts of word patterns (grams, k-tuples) has become an active research topic due to the large amount of sequence data from the new sequencing technologies. Genome sequences are frequently
Externí odkaz:
https://doaj.org/article/123fef1e4a814ba5833a192aaf0a48ad
Publikováno v:
Frontiers in Microbiology, Vol 9 (2018)
Horizontal gene transfer (HGT) plays an important role in the evolution of microbial organisms including bacteria. Alignment-free methods based on single genome compositional information have been used to detect HGT. Currently, Manhattan and Euclidea
Externí odkaz:
https://doaj.org/article/032878b8d8034aa69a89d70e03a83480
Autor:
Kujin Tang, Guillaume Bernard, Jonas S. Almeida, Fengzhu Sun, Wojciech M. Karlowski, Sophie Röhling, Jae Jin Choi, Anna Katharina Lau, Burkhard Morgenstern, Cheong Xin Chan, Susana Vinga, Michael S. Waterman, Sung-Hou Kim, Matteo Comin, Thomas Dencker, Chris-André Leimeister, Hani Z. Girgis, Benjamin T James, Andrzej Zielezinski
Publikováno v:
Genome Biology, Vol 20, Iss 1, Pp 1-18 (2019)
Genome Biology
Genome Biology, BioMed Central, 2019, 20, pp.144. ⟨10.1186/s13059-019-1755-7⟩
Genome Biology
Genome Biology, BioMed Central, 2019, 20, pp.144. ⟨10.1186/s13059-019-1755-7⟩
Background Alignment-free (AF) sequence comparison is attracting persistent interest driven by data-intensive applications. Hence, many AF procedures have been proposed in recent years, but a lack of a clearly defined benchmarking consensus hampers t
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::6049e1d33428c09f45a2cff91120a9f4
http://link.springer.com/article/10.1186/s13059-019-1755-7
http://link.springer.com/article/10.1186/s13059-019-1755-7
Autor:
Weili Wang, Jed A. Fuhrman, Nathan A. Ahlgren, Julio Cesar Ignacio-Espinoza, Kujin Tang, Emily Dart, Jonathan Braun, Jie Ren, Fengzhu Sun
Publikováno v:
Nar Genomics and Bioinformatics
Metagenomic sequencing has greatly enhanced the discovery of viral genomic sequences; however, it remains challenging to identify the host(s) of these new viruses. We developed VirHostMatcher-Net, a flexible, network-based, Markov random field framew
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::87587a2d87d9da220b1da2af7b40fa5d
https://doi.org/10.1093/nargab/lqaa044
https://doi.org/10.1093/nargab/lqaa044
Publikováno v:
Genome Biology
Genome Biology, Vol 20, Iss 1, Pp 1-17 (2019)
Genome Biology, Vol 20, Iss 1, Pp 1-17 (2019)
Alignment-free methods, more time and memory efficient than alignment-based methods, have been widely used for comparing genome sequences or raw sequencing samples without assembly. However, in this study, we show that alignment-free dissimilarity ca
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5af7eba68ea8827e88dc2342eb13f2f3
http://europepmc.org/articles/PMC6891986
http://europepmc.org/articles/PMC6891986
Publikováno v:
BMC Genomics. 10/3/2017, Vol. 18, p17-28. 12p. 3 Charts, 6 Graphs.
Publikováno v:
BMC Genomics, Vol 18, Iss S6, Pp 19-30 (2017)
Alignment-free sequence comparison using counts of word patterns (grams, k-tuples) has become an active research topic due to the large amount of sequence data from the new sequencing technologies. Genome sequences are frequently modelled by Markov c
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::503abe6dc3ac15fb67f692e91e56e49a
http://link.springer.com/article/10.1186/s12864-017-4020-z
http://link.springer.com/article/10.1186/s12864-017-4020-z