Zobrazeno 1 - 10
of 24
pro vyhledávání: '"Krzysztof Gogolewski"'
Autor:
Barbara Poszewiecka, Krzysztof Gogolewski, Justyna A. Karolak, Paweł Stankiewicz, Anna Gambin
Publikováno v:
Genome Biology, Vol 24, Iss 1, Pp 1-23 (2023)
Abstract Resolving complex genomic regions rich in segmental duplications (SDs) is challenging due to the high error rate of long-read sequencing. Here, we describe a targeted approach with a novel genome assembler PhaseDancer that extends SD-rich re
Externí odkaz:
https://doaj.org/article/1da674f077d64a558178a1d2ce901c11
Autor:
Johannes Bracher, Daniel Wolffram, Jannik Deuschel, Konstantin Görgen, Jakob L. Ketterer, Alexander Ullrich, Sam Abbott, Maria V. Barbarossa, Dimitris Bertsimas, Sangeeta Bhatia, Marcin Bodych, Nikos I. Bosse, Jan Pablo Burgard, Lauren Castro, Geoffrey Fairchild, Jochen Fiedler, Jan Fuhrmann, Sebastian Funk, Anna Gambin, Krzysztof Gogolewski, Stefan Heyder, Thomas Hotz, Yuri Kheifetz, Holger Kirsten, Tyll Krueger, Ekaterina Krymova, Neele Leithäuser, Michael L. Li, Jan H. Meinke, Błażej Miasojedow, Isaac J. Michaud, Jan Mohring, Pierre Nouvellet, Jedrzej M. Nowosielski, Tomasz Ozanski, Maciej Radwan, Franciszek Rakowski, Markus Scholz, Saksham Soni, Ajitesh Srivastava, Tilmann Gneiting, Melanie Schienle
Publikováno v:
Communications Medicine, Vol 2, Iss 1, Pp 1-17 (2022)
Bracher et al. compare 15 forecasting models of COVID-19 cases and deaths in Germany and Poland between January and mid-April 2021. Many, though not all, models outperform a simple baseline model up to four weeks ahead, with ensemble methods showing
Externí odkaz:
https://doaj.org/article/538dfac0ac9e4eb3b14e8b4242363283
Publikováno v:
BMC Genomics, Vol 23, Iss S6, Pp 1-16 (2022)
Abstract Background The reduction of the chromosome number from 48 in the Great Apes to 46 in modern humans is thought to result from the end-to-end fusion of two ancestral non-human primate chromosomes forming the human chromosome 2 (HSA2). Genomic
Externí odkaz:
https://doaj.org/article/1940433a3fcf49dfba467160f401a600
Autor:
Katharine Sherratt, Hugo Gruson, Rok Grah, Helen Johnson, Rene Niehus, Bastian Prasse, Frank Sandmann, Jannik Deuschel, Daniel Wolffram, Sam Abbott, Alexander Ullrich, Graham Gibson, Evan L Ray, Nicholas G Reich, Daniel Sheldon, Yijin Wang, Nutcha Wattanachit, Lijing Wang, Jan Trnka, Guillaume Obozinski, Tao Sun, Dorina Thanou, Loic Pottier, Ekaterina Krymova, Jan H Meinke, Maria Vittoria Barbarossa, Neele Leithauser, Jan Mohring, Johanna Schneider, Jaroslaw Wlazlo, Jan Fuhrmann, Berit Lange, Isti Rodiah, Prasith Baccam, Heidi Gurung, Steven Stage, Bradley Suchoski, Jozef Budzinski, Robert Walraven, Inmaculada Villanueva, Vit Tucek, Martin Smid, Milan Zajicek, Cesar Perez Alvarez, Borja Reina, Nikos I Bosse, Sophie R Meakin, Lauren Castro, Geoffrey Fairchild, Isaac Michaud, Dave Osthus, Pierfrancesco Alaimo Di Loro, Antonello Maruotti, Veronika Eclerova, Andrea Kraus, David Kraus, Lenka Pribylova, Bertsimas Dimitris, Michael Lingzhi Li, Soni Saksham, Jonas Dehning, Sebastian Mohr, Viola Priesemann, Grzegorz Redlarski, Benjamin Bejar, Giovanni Ardenghi, Nicola Parolini, Giovanni Ziarelli, Wolfgang Bock, Stefan Heyder, Thomas Hotz, David E Singh, Miguel Guzman-Merino, Jose L Aznarte, David Morina, Sergio Alonso, Enric Alvarez, Daniel Lopez, Clara Prats, Jan Pablo Burgard, Arne Rodloff, Tom Zimmermann, Alexander Kuhlmann, Janez Zibert, Fulvia Pennoni, Fabio Divino, Marti Catala, Gianfranco Lovison, Paolo Giudici, Barbara Tarantino, Francesco Bartolucci, Giovanna Jona Lasinio, Marco Mingione, Alessio Farcomeni, Ajitesh Srivastava, Pablo Montero-Manso, Aniruddha Adiga, Benjamin Hurt, Bryan Lewis, Madhav Marathe, Przemyslaw Porebski, Srinivasan Venkatramanan, Rafal P Bartczuk, Filip Dreger, Anna Gambin, Krzysztof Gogolewski, Magdalena Gruziel-Slomka, Bartosz Krupa, Antoni Moszyński, Karol Niedzielewski, Jedrzej Nowosielski, Maciej Radwan, Franciszek Rakowski, Marcin Semeniuk, Ewa Szczurek, Jakub Zielinski, Jan Kisielewski, Barbara Pabjan, Kirsten Holger, Yuri Kheifetz, Markus Scholz, Biecek Przemyslaw, Marcin Bodych, Maciej Filinski, Radoslaw Idzikowski, Tyll Krueger, Tomasz Ozanski, Johannes Bracher, Sebastian Funk
Publikováno v:
eLife, Vol 12 (2023)
Background: Short-term forecasts of infectious disease burden can contribute to situational awareness and aid capacity planning. Based on best practice in other fields and recent insights in infectious disease epidemiology, one can maximise the predi
Externí odkaz:
https://doaj.org/article/26d25f44b203488cba00565db28416bb
Autor:
Tyll Krueger, Krzysztof Gogolewski, Marcin Bodych, Anna Gambin, Giulia Giordano, Sarah Cuschieri, Thomas Czypionka, Matjaz Perc, Elena Petelos, Magdalena Rosińska, Ewa Szczurek
Publikováno v:
Communications Medicine, Vol 2, Iss 1, Pp 1-14 (2022)
Krueger, Gogolewski, and Bodych et al. assess the risk of COVID-19 epidemic resurgence in relation to SARS-CoV-2 variants and vaccination passes. Their model predicts that new COVID-19 infection waves within two years from the onset of the vaccinatio
Externí odkaz:
https://doaj.org/article/54a1932ddc614c9ea506bcdb3d2a1dc0
Autor:
Katerina Makarova, Joanna J. Sajkowska-Kozielewicz, Katarzyna Zawada, Ewa Olchowik-Grabarek, Michał Aleksander Ciach, Krzysztof Gogolewski, Natalia Dobros, Paulina Ciechowicz, Hélène Freichels, Anna Gambin
Publikováno v:
Scientific Reports, Vol 11, Iss 1, Pp 1-12 (2021)
Abstract The polyphenol content and antioxidant capacity of hyperforin and hypericin-standardized H. perforatum L. extracts may vary due to the harvest time. In this work, ethanol and ethanol–water extracts of air-dried and lyophilized flowers of H
Externí odkaz:
https://doaj.org/article/3bd3fc227b974e16b27f5e1d0dafe462
Autor:
Avinash V. Dharmadhikari, Jenny J. Sun, Krzysztof Gogolewski, Brandi L. Carofino, Vladimir Ustiyan, Misty Hill, Tadeusz Majewski, Przemyslaw Szafranski, Monica J. Justice, Russell S. Ray, Mary E. Dickinson, Vladimir V. Kalinichenko, Anna Gambin, Paweł Stankiewicz
Publikováno v:
Biology Open, Vol 5, Iss 11, Pp 1595-1606 (2016)
FOXF1 heterozygous point mutations and genomic deletions have been reported in newborns with the neonatally lethal lung developmental disorder, alveolar capillary dysplasia with misalignment of pulmonary veins (ACDMPV). However, no gain-of-function m
Externí odkaz:
https://doaj.org/article/f142a9f10d4e46209de988fa38a1217b
Publikováno v:
Entropy, Vol 22, Iss 11, p 1238 (2020)
The constantly and rapidly increasing amount of the biological data gained from many different high-throughput experiments opens up new possibilities for data- and model-driven inference. Yet, alongside, emerges a problem of risks related to data int
Externí odkaz:
https://doaj.org/article/d2ee567859e84241b19bc7a236b5b10c
Autor:
Krzysztof Gogolewski, Błażej Miasojedow, Małgorzata Sadkowska-Todys, Małgorzata Stepień, Urszula Demkow, Agnieszka Lech, Ewa Szczurek, Daniel Rabczenko, Magdalena Rosińska, Anna Gambin
Publikováno v:
Methods (San Diego, Calif.)
After more than one and a half year since the COVID-19 pandemics outbreak the scientific world is constantly trying to understand its dynamics. In this paper of the case fatality rates (CFR) for COVID-19 we study the historic data regarding mortality
Autor:
Barbara Poszewiecka, Victor Murcia Pienkowski, Karol Nowosad, Jérôme D Robin, Krzysztof Gogolewski, Anna Gambin
Publikováno v:
Nucleic Acids Research
Nucleic Acids Research, 2022, 50 (W1), pp.W744-W752. ⟨10.1093/nar/gkac318⟩
Nucleic Acids Research, 50(W1), W744-W752. Oxford University Press
Nucleic Acids Research, 2022, 50 (W1), pp.W744-W752. ⟨10.1093/nar/gkac318⟩
Nucleic Acids Research, 50(W1), W744-W752. Oxford University Press
In recent years great progress has been made in identification of structural variants (SV) in the human genome. However, the interpretation of SVs, especially located in non-coding DNA, remains challenging. One of the reasons stems in the lack of too