Zobrazeno 1 - 10
of 55
pro vyhledávání: '"Krister M. Swenson"'
Publikováno v:
Algorithms for Molecular Biology, Vol 14, Iss 1, Pp 1-14 (2019)
Abstract This paper generalizes previous studies on genome rearrangement under biological constraints, using double cut and join (DCJ). We propose a model for weighted DCJ, along with a family of optimization problems called $$\varphi$$ φ -MCPS (Min
Externí odkaz:
https://doaj.org/article/6c1212496f084629aba36380f88c62f7
Autor:
Pijus Simonaitis, Krister M. Swenson
Publikováno v:
Algorithms for Molecular Biology, Vol 13, Iss 1, Pp 1-14 (2018)
Abstract Background The double cut and join (DCJ) model of genome rearrangement is well studied due to its mathematical simplicity and power to account for the many events that transform gene order. These studies have mostly been devoted to the under
Externí odkaz:
https://doaj.org/article/e3210d0bf54141fea793c88cbcd45dbd
Autor:
Samuel Blanquart, Jean-Stéphane Varré, Paul Guertin, Amandine Perrin, Anne Bergeron, Krister M. Swenson
Publikováno v:
BMC Genomics, Vol 17, Iss S10, Pp 157-164 (2016)
Abstract Background Transcriptome reconstruction, defined as the identification of all protein isoforms that may be expressed by a gene, is a notably difficult computational task. With real data, the best methods based on RNA-seq data identify barely
Externí odkaz:
https://doaj.org/article/b6c77dec65634531a036a7de85df9de2
Publikováno v:
PLoS ONE, Vol 15, Iss 2, p e0228676 (2020)
Production of the Panton-Valentine leukocidin (PVL) by Staphylococcus aureus is mediated via the genes lukS-PV and lukF-PV which are carried on bacteriophage ϕSa2. PVL is associated with S. aureus strains that cause serious infections and clones of
Externí odkaz:
https://doaj.org/article/984c989af7ea4e6da6578e887d19eca9
Publikováno v:
Bioinformatics. 39
MotivationThe phylogenetic signal of structural variation informs a more comprehensive understanding of evolution. As (near-)complete genome assembly becomes more commonplace, the next methodological challenge for inferring genome rearrangement trees
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::22892b8c1889f0e3c1ab6ea36b3e4d06
https://doi.org/10.1093/bioinformatics/btad024
https://doi.org/10.1093/bioinformatics/btad024
Autor:
Anne BERGERON, Krister M. SWENSON
L'évolution moléculaire se manifeste à différentes échelles au sein des génomes. Une de ses expressions les plus spectaculaires est le réarrangement de gènes, un phénomène évolutif par lequel sont modifiés la composition en gènes des chr
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::40ad951b2f2b3f845713f7bfeae03af7
https://doi.org/10.51926/iste.9069.ch5
https://doi.org/10.51926/iste.9069.ch5
Phylogenetic inference based on genomic structural variations, that manipulate the gene order and content of whole chromosomes, promises to inform a more comprehensive understanding of evolution. The first challenge in using such data, the incomplete
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::caf2abed1de1390b5a919ee0b4cc82ab
https://doi.org/10.1101/2022.02.18.481113
https://doi.org/10.1101/2022.02.18.481113
Publikováno v:
Comparative Genomics ISBN: 9783031062193
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::20cc7743971347a502a22514538a1d80
https://doi.org/10.1007/978-3-031-06220-9_1
https://doi.org/10.1007/978-3-031-06220-9_1
Publikováno v:
Comparative Genomics ISBN: 9783031062193
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::5a52e98ac9095be4bdcbed9aecb9ba1d
https://doi.org/10.1007/978-3-031-06220-9_9
https://doi.org/10.1007/978-3-031-06220-9_9
Publikováno v:
Algorithms for Molecular Biology, Vol 14, Iss 1, Pp 1-14 (2019)
Algorithms for Molecular Biology
Algorithms for Molecular Biology, BioMed Central, 2019, 14 (1), ⟨10.1186/s13015-019-0149-4⟩
Algorithms for Molecular Biology, 2019, 14 (1), ⟨10.1186/s13015-019-0149-4⟩
16th International Conference on Comparative Genomics
RECOMB-CG: Comparative Genomics
RECOMB-CG: Comparative Genomics, Oct 2018, Magog-Orford, QC, Canada. pp.49-71, ⟨10.1007/978-3-030-00834-5_3⟩
Comparative Genomics ISBN: 9783030008338
RECOMB-CG
Algorithms for Molecular Biology : AMB
Algorithms for Molecular Biology
Algorithms for Molecular Biology, BioMed Central, 2019, 14 (1), ⟨10.1186/s13015-019-0149-4⟩
Algorithms for Molecular Biology, 2019, 14 (1), ⟨10.1186/s13015-019-0149-4⟩
16th International Conference on Comparative Genomics
RECOMB-CG: Comparative Genomics
RECOMB-CG: Comparative Genomics, Oct 2018, Magog-Orford, QC, Canada. pp.49-71, ⟨10.1007/978-3-030-00834-5_3⟩
Comparative Genomics ISBN: 9783030008338
RECOMB-CG
Algorithms for Molecular Biology : AMB
This paper generalizes previous studies on genome rearrangement under biological constraints, using double cut and join (DCJ). We propose a model for weighted DCJ, along with a family of optimization problems called \documentclass[12pt]{minimal} \use
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::5b3613046a001eda84f1a8515bbf8439
http://link.springer.com/article/10.1186/s13015-019-0149-4
http://link.springer.com/article/10.1186/s13015-019-0149-4