Efficient Genome-Wide Detection and Cataloging of EMS-Induced Mutations Using Exome Capture and Next-Generation Sequencing

Autor: Henry, IM, Nagalakshmi, U, Lieberman, MC, Ngo, KJ, Krasileva, KV, Vasquez-Gross, H, Akhunova, A, Akhunov, E, Dubcovsky, J, Tai, TH, Comai, L

Publikováno v: The Plant cell, vol 26, iss 4
Henry, IM; Nagalakshmi, U; Lieberman, MC; Ngo, KJ; Krasileva, KV; Vasquez-Gross, H; et al.(2014). Efficient genome-wide detection and cataloging of EMS-induced mutations using Exome capture and next-generation sequencing. Plant Cell, 26(4), 1382-1397. doi: 10.1105/tpc.113.121590. UC Davis: Retrieved from: http://www.escholarship.org/uc/item/9pc1h27b

Chemical mutagenesis efficiently generates phenotypic variation in otherwise homogeneous genetic backgrounds, enabling functional analysis of genes. Advances in mutation detection have brought the utility of induced mutant populations on par with tho

Externí odkaz: https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::a33c8de5c03d2253503976ef69b5b9e1
https://escholarship.org/uc/item/9pc1h27b

An array of Zymoseptoria tritici effectors suppress plant immune responses.

Autor: Thynne E; Botanical Institute, Christian-Albrechts University, Kiel, Germany.; Max Planck Institute for Molecular Biology, Plön, Germany., Ali H; School of Biosciences, University of Birmingham, Birmingham, UK., Seong K; Department of Plant and Molecular Biology, University of California, Berkeley, California, USA., Abukhalaf M; Institute for Experimental Medicine, Christian-Albrechts University (UK-SH Campus), Kiel, Germany., Guerreiro MA; Botanical Institute, Christian-Albrechts University, Kiel, Germany.; Max Planck Institute for Molecular Biology, Plön, Germany., Flores-Nunez VM; Botanical Institute, Christian-Albrechts University, Kiel, Germany.; Max Planck Institute for Molecular Biology, Plön, Germany., Hansen R; Botanical Institute, Christian-Albrechts University, Kiel, Germany.; Max Planck Institute for Molecular Biology, Plön, Germany., Bergues A; Botanical Institute, Christian-Albrechts University, Kiel, Germany.; Max Planck Institute for Molecular Biology, Plön, Germany., Salman MJ; Botanical Institute, Christian-Albrechts University, Kiel, Germany., Rudd JJ; Department of Plant Biology and Crop Science, Rothamsted Research, Harpenden, UK., Kanyuka K; National Institute of Agricultural Botany (NIAB), Cambridge, UK., Tholey A; Department of Plant and Molecular Biology, University of California, Berkeley, California, USA., Krasileva KV; Institute for Experimental Medicine, Christian-Albrechts University (UK-SH Campus), Kiel, Germany., Kettles GJ; School of Biosciences, University of Birmingham, Birmingham, UK., Stukenbrock EH; Botanical Institute, Christian-Albrechts University, Kiel, Germany.; Max Planck Institute for Molecular Biology, Plön, Germany.

Publikováno v: Molecular plant pathology [Mol Plant Pathol] 2024 Oct; Vol. 25 (10), pp. e13500.

Distinct genomic contexts predict gene presence-absence variation in different pathotypes of Magnaporthe oryzae.

Autor: Joubert PM; Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA 94720, USA.; Center for Computational Biology, University of California-Berkeley, Berkeley, CA 94720, USA., Krasileva KV; Department of Plant and Microbial Biology, University of California-Berkeley, Berkeley, CA 94720, USA.; Center for Computational Biology, University of California-Berkeley, Berkeley, CA 94720, USA.

Publikováno v: Genetics [Genetics] 2024 Apr 03; Vol. 226 (4).

High intraspecies allelic diversity in Arabidopsis NLR immune receptors is associated with distinct genomic and epigenomic features.

Autor: Sutherland CA; Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, USA 94720., Prigozhin DM; Molecular Biophysics and Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA, USA 94720., Monroe JG; Department of Plant Sciences, University of California Davis, Davis, CA, USA 95616., Krasileva KV; Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, USA 94720.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2023 Oct 05. Date of Electronic Publication: 2023 Oct 05.

A wheat kinase and immune receptor form host-specificity barriers against the blast fungus.

Autor: Arora S; John Innes Centre, Norwich Research Park, Norwich, UK., Steed A; John Innes Centre, Norwich Research Park, Norwich, UK., Goddard R; John Innes Centre, Norwich Research Park, Norwich, UK.; Limagrain UK Ltd, Lincolnshire, UK., Gaurav K; John Innes Centre, Norwich Research Park, Norwich, UK.; European Molecular Biology Laboratory, European Bioinformatics Institute EMBL-EBI, Hinxton, UK., O'Hara T; John Innes Centre, Norwich Research Park, Norwich, UK., Schoen A; Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA., Rawat N; Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA., Elkot AF; Wheat Research Department, Field Crops Research Institute, Agricultural Research Center, Giza, Egypt., Korolev AV; John Innes Centre, Norwich Research Park, Norwich, UK., Chinoy C; John Innes Centre, Norwich Research Park, Norwich, UK., Nicholson MH; John Innes Centre, Norwich Research Park, Norwich, UK., Asuke S; Graduate School of Agricultural Science, Kobe University, Kobe, Japan., Antoniou-Kourounioti R; John Innes Centre, Norwich Research Park, Norwich, UK.; School of Molecular Biosciences, College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK., Steuernagel B; John Innes Centre, Norwich Research Park, Norwich, UK., Yu G; John Innes Centre, Norwich Research Park, Norwich, UK.; Center for Desert Agriculture, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia., Awal R; John Innes Centre, Norwich Research Park, Norwich, UK., Forner-Martínez M; John Innes Centre, Norwich Research Park, Norwich, UK., Wingen L; John Innes Centre, Norwich Research Park, Norwich, UK., Baggs E; Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA., Clarke J; John Innes Centre, Norwich Research Park, Norwich, UK., Saunders DGO; John Innes Centre, Norwich Research Park, Norwich, UK., Krasileva KV; Department of Plant and Microbial Biology, University of California, Berkeley, CA, USA., Tosa Y; Graduate School of Agricultural Science, Kobe University, Kobe, Japan., Jones JDG; The Sainsbury Laboratory, Norwich Research Park, Norwich, UK., Tiwari VK; Department of Plant Science and Landscape Architecture, University of Maryland, College Park, MD, USA., Wulff BBH; John Innes Centre, Norwich Research Park, Norwich, UK. brande.wulff@kaust.edu.sa.; Center for Desert Agriculture, Biological and Environmental Science and Engineering Division (BESE), King Abdullah University of Science and Technology (KAUST), Thuwal, Saudi Arabia. brande.wulff@kaust.edu.sa., Nicholson P; John Innes Centre, Norwich Research Park, Norwich, UK. paul.nicholson@jic.ac.uk.

Publikováno v: Nature plants [Nat Plants] 2023 Mar; Vol. 9 (3), pp. 385-392. Date of Electronic Publication: 2023 Feb 16.