Zobrazeno 1 - 10
of 44
pro vyhledávání: '"Kranthi Varala"'
Autor:
Chia-Yi Cheng, Ying Li, Kranthi Varala, Jessica Bubert, Ji Huang, Grace J. Kim, Justin Halim, Jennifer Arp, Hung-Jui S. Shih, Grace Levinson, Seo Hyun Park, Ha Young Cho, Stephen P. Moose, Gloria M. Coruzzi
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Predicting complex phenotypes from genomic information is still a challenge. Here, the authors use an evolutionarily informed machine learning approach within and across species to predict genes affecting nitrogen utilization in crops, and show their
Externí odkaz:
https://doaj.org/article/df8c1a08be1a4c64bc07660726b1c1e2
Autor:
Lihong Li, Melaku Garsamo, Jing Yuan, Xiaojin Wang, Susan H. Lam, Kranthi Varala, Leonor C. Boavida, Yun Zhou, Xing Liu
Publikováno v:
Frontiers in Plant Science, Vol 13 (2022)
The dynamic assembly of SKP1•CUL1•F-box protein (SCF) ubiquitin ligases is important for protein ubiquitination and degradation. This process is enabled by CAND1, which exchanges F-box proteins associated with the common CUL1 scaffold, and thereb
Externí odkaz:
https://doaj.org/article/b094ff445a584cefaa699f339e767253
Autor:
José M. Alvarez, Anna-Lena Schinke, Matthew D. Brooks, Angelo Pasquino, Lauriebeth Leonelli, Kranthi Varala, Alaeddine Safi, Gabriel Krouk, Anne Krapp, Gloria M. Coruzzi
Publikováno v:
Nature Communications, Vol 11, Iss 1, Pp 1-13 (2020)
Conventional methods cannot reveal transient transcription factors (TFs) and targets interactions. Here, Alvarez et al. capture both stable and transient TF-target interactions by time-series ChIP-seq and/or DamID-seq in a cell-based TF perturbation
Externí odkaz:
https://doaj.org/article/3e7c1767b2d34c089055f0b932128ac5
Autor:
Matthew D. Brooks, Jacopo Cirrone, Angelo V. Pasquino, Jose M. Alvarez, Joseph Swift, Shipra Mittal, Che-Lun Juang, Kranthi Varala, Rodrigo A. Gutiérrez, Gabriel Krouk, Dennis Shasha, Gloria M. Coruzzi
Publikováno v:
Nature Communications, Vol 10, Iss 1, Pp 1-13 (2019)
Temporal control of transcriptional networks enables organisms to adapt to changing environment. Here, the authors use a scaled-up cell-based assay to identify direct targets of nitrogen-early responsive transcription factors and validate a network p
Externí odkaz:
https://doaj.org/article/8373c4440151476f9e29c51167aed1f3
Publikováno v:
Plants, Vol 10, Iss 2, p 364 (2021)
Upon sensing developmental or environmental cues, epigenetic regulators transform the chromatin landscape of a network of genes to modulate their expression and dictate adequate cellular and organismal responses. Knowledge of the specific biological
Externí odkaz:
https://doaj.org/article/6aaf2573f1324a5cbe55898190cfa4ed
Autor:
Pierre-Marc Delaux, Kranthi Varala, Patrick P Edger, Gloria M Coruzzi, J Chris Pires, Jean-Michel Ané
Publikováno v:
PLoS Genetics, Vol 10, Iss 7, p e1004487 (2014)
Mutualistic symbioses between eukaryotes and beneficial microorganisms of their microbiome play an essential role in nutrition, protection against disease, and development of the host. However, the impact of beneficial symbionts on the evolution of h
Externí odkaz:
https://doaj.org/article/0f90befd84b24078801208fc7fa073cb
Publikováno v:
PLoS ONE, Vol 7, Iss 10, p e47043 (2012)
Hybrids often display increased size and growth, and thus are widely cultivated in agriculture and horticulture. Recent discoveries demonstrating the important regulatory roles of small RNAs have greatly improved our understanding of many basic biolo
Externí odkaz:
https://doaj.org/article/bfab468c67cf46489688236ac745b2d7
Publikováno v:
PLoS ONE, Vol 6, Iss 9, p e24811 (2011)
Soybean (Glycine max) breeding involves improving commercially grown varieties by introgressing important agronomic traits from poor yielding accessions and/or wild relatives of soybean while minimizing the associated yield drag. Molecular markers as
Externí odkaz:
https://doaj.org/article/a63203da022648b5833f5af4293d15fe
Autor:
Ying Li, Grace Kim, Grace Levinson, Gloria M. Coruzzi, Chia Yi Cheng, Hung Jui S. Shih, Jessica Bubert, Kranthi Varala, Ha Young Cho, Ji Huang, Jennifer Arp, Justin Halim, Seo Hyun Park, Stephen P. Moose
Publikováno v:
Nature Communications, Vol 12, Iss 1, Pp 1-15 (2021)
Nature Communications
Nature Communications
Inferring phenotypic outcomes from genomic features is both a promise and challenge for systems biology. Using gene expression data to predict phenotypic outcomes, and functionally validating the genes with predictive powers are two challenges we add
Autor:
Thomas Dussarrat, Sylvain Prigent, Claudio Latorre, Stéphane Bernillon, Amélie Flandin, Francisca P.Díaz, Cédric Cassan, Pierre Van Delft, Daniel Jacob, Kranthi Varala, Jérôme Joubes, Yves Gibon, Dominique Rolin, Rodrigo A.Gutiérrez, Pierre Pétriacq
Publikováno v:
New Phytologist
Current crop yield of the best ideotypes is stagnating and threatened by climate change. In this scenario, understanding wild plant adaptations in extreme ecosystems offers an opportunity to learn about new mechanisms for resilience. Previous studies