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PTEN regulates expression of its pseudogene in glioblastoma cells in DNA methylation-dependent manner.

Autor: Kovalenko TF; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia., Yadav B; Amity Institute of Biotechnology, Amity University Haryana, Panchgaon, Manesar, Haryana, India., Anufrieva KS; Laboratory of System Biology, Lopukhin Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia., Larionova TD; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia., Aksinina TE; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia., Latyshev YA; Federal State Autonomous Institution, N.N. Burdenko National Medical Research Center of Neurosurgery, Moscow, Russia., Bastola S; Department of Bioengineering, University of California Los Angeles, Los Angeles, CA, USA., Shakhparonov MI; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia., Pandey AK; Amity Institute of Biotechnology, Amity University Haryana, Panchgaon, Manesar, Haryana, India; National Institute of Pharmaceutical Education and Research, Palaj, Gandhinagar, Gujarat, India., Pavlyukov MS; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russia. Electronic address: marat.pav@mail.ru.

Publikováno v: Biochimie [Biochimie] 2024 Apr; Vol. 219, pp. 74-83. Date of Electronic Publication: 2023 Aug 22.

Alternative RNA splicing modulates ribosomal composition and determines the spatial phenotype of glioblastoma cells.

Autor: Larionova TD; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation., Bastola S; Department of Bioengineering, University of California Los Angeles, Los Angeles, CA, USA., Aksinina TE; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation., Anufrieva KS; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical Biological Agency, Moscow, Russian Federation.; Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical and Biological Agency, Moscow, Russian Federation., Wang J; Department of Neurosurgery, Centre of Brain Science, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China., Shender VO; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical Biological Agency, Moscow, Russian Federation.; Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical and Biological Agency, Moscow, Russian Federation., Andreev DE; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russian Federation., Kovalenko TF; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation., Arapidi GP; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical Biological Agency, Moscow, Russian Federation.; Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical and Biological Agency, Moscow, Russian Federation., Shnaider PV; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical Biological Agency, Moscow, Russian Federation.; Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical and Biological Agency, Moscow, Russian Federation., Kazakova AN; Federal Research and Clinical Center of Physical-Chemical Medicine, Federal Medical and Biological Agency, Moscow, Russian Federation., Latyshev YA; N.N. Burdenko National Medical Research Center of Neurosurgery, Ministry of Health of the Russian Federation, Moscow, Russian Federation., Tatarskiy VV; Institute of Gene Biology, Russian Academy of Sciences, Moscow, Russian Federation., Shtil AA; Blokhin National Medical Research Center of Oncology, Moscow, Russian Federation., Moreau P; Institute of Chemistry of Clermont-Ferrand, CNRS, Université Clermont Auvergne, Clermont-Ferrand, France., Giraud F; Institute of Chemistry of Clermont-Ferrand, CNRS, Université Clermont Auvergne, Clermont-Ferrand, France., Li C; Department of Neurosurgery, School of Medicine and O'Neal Comprehensive Cancer Center, University of Alabama at Birmingham, Birmingham, AL, USA., Wang Y; Department of Neurosurgery, Centre of Brain Science, First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, China., Rubtsova MP; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russian Federation., Dontsova OA; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation.; Belozersky Institute of Physico-Chemical Biology, Lomonosov Moscow State University, Moscow, Russian Federation.; Center of Life Sciences, Skolkovo Institute of Science and Technology, Moscow, Russian Federation., Condro M; Department of Bioengineering, University of California Los Angeles, Los Angeles, CA, USA., Ellingson BM; Brain Tumor Imaging Laboratory, Center for Computer Vision and Imaging Biomarkers, University of California Los Angeles, Los Angeles, CA, USA.; Department of Radiological Sciences, University of California Los Angeles, Los Angeles, CA, USA.; Department of Psychiatry, University of California Los Angeles, Los Angeles, CA, USA.; Department of Neurosurgery, University of California Los Angeles, Los Angeles, CA, USA., Shakhparonov MI; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation., Kornblum HI; Intellectual and Developmental Disabilities Research Center, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA., Nakano I; Department of Neurosurgery, Medical Institute of Hokuto, Hokkaido, Japan. ichironakano1369@gmail.com., Pavlyukov MS; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Moscow, Russian Federation. marat.pav@mail.ru.; Centre for Genomic Regulation, Barcelona Institute of Science and Technology, Barcelona, Spain. marat.pav@mail.ru.

Publikováno v: Nature cell biology [Nat Cell Biol] 2022 Oct; Vol. 24 (10), pp. 1541-1557. Date of Electronic Publication: 2022 Oct 03.

The Prognostic Significance of Spliceosomal Proteins for Patients with Glioblastoma.

Autor: Larionova TD; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia., Kovalenko TF; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia., Shakhparonov MI; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia., Pavlyukov MS; Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Moscow, Russia. marat.pav@mail.ru.

Publikováno v: Doklady. Biochemistry and biophysics [Dokl Biochem Biophys] 2022 Apr; Vol. 503 (1), pp. 71-75. Date of Electronic Publication: 2022 May 10.

Methylation of the PTENP1 pseudogene as potential epigenetic marker of age-related changes in human endometrium.

Autor: Kovalenko TF; Laboratory of membrane bioenergetics, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry Russian Academy of Sciences, Moscow, Russia., Morozova KV; Department of Obstetrics and Gynecology, Pirogov Russian National Research Medical University, Moscow, Russia., Pavlyukov MS; Laboratory of membrane bioenergetics, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry Russian Academy of Sciences, Moscow, Russia., Anufrieva KS; Center for Precision Genome Editing and Genetic Technologies for Biomedicine, Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia.; Laboratory of Cell Biology, Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia.; Moscow Institute of Physics and Technology (State University), Moscow Region, Russia., Bobrov MY; Laboratory of Molecular Pathophysiology, Kulakov Research Center of Obstetrics, Gynecology and Perinatology, Ministry of Healthcare of Russian Federation, Moscow, Russia., Gamisoniya AM; Laboratory of Molecular Pathophysiology, Kulakov Research Center of Obstetrics, Gynecology and Perinatology, Ministry of Healthcare of Russian Federation, Moscow, Russia.; Laboratory of oxylipins, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry Russian Academy of Sciences, Moscow, Russia., Ozolinya LA; Department of Obstetrics and Gynecology, Pirogov Russian National Research Medical University, Moscow, Russia., Dobrokhotova YE; Department of Obstetrics and Gynecology, Pirogov Russian National Research Medical University, Moscow, Russia., Shakhparonov MI; Laboratory of membrane bioenergetics, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry Russian Academy of Sciences, Moscow, Russia., Patrushev LI; Educational & scientific center, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry Russian Academy of Sciences, Moscow, Russia.

Publikováno v: PloS one [PLoS One] 2021 Jan 22; Vol. 16 (1), pp. e0243093. Date of Electronic Publication: 2021 Jan 22 (Print Publication: 2021).