Microbial and Viral Ecology Analysis for Metagenomic Data

Autor: Kosmopoulos, James C., Anantharaman, Karthik

The explosion in known microbial diversity in the last two decades has made it abundantly clear that microbes in the environment do not exist in isolation; they are members of communities. Accordingly, omics approaches such as metagenomics have revea

Externí odkaz: http://arxiv.org/abs/2407.08858

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ViWrap: A modular pipeline to identify, bin, classify, and predict viral-host relationships for viruses from metagenomes.

Autor: Zhichao Zhou, Martin, Cody, Kosmopoulos, James C., Anantharaman, Karthik

Publikováno v: iMeta; Aug2023, Vol. 2 Issue 3, p1-11, 11p

V- and V L -Scores Uncover Viral Signatures and Origins of Protein Families.

Autor: Zhou K; State Key Laboratory of Marine Geology, Tongji University, Shanghai, China.; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA., Kosmopoulos JC; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.; Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI, USA., Colón ED; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.; Microbiology Doctoral Training Program, University of Wisconsin-Madison, Madison, WI, USA., Badciong PJ; State Key Laboratory of Marine Geology, Tongji University, Shanghai, China., Anantharaman K; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.; Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, USA.; Department of Data Science and AI, Wadhwani School of Data Science and AI, Indian Institute of Technology Madras, Chennai, India.

Publikováno v: BioRxiv : the preprint server for biology [bioRxiv] 2024 Oct 29. Date of Electronic Publication: 2024 Oct 29.