Zobrazeno 1 - 10
of 15
pro vyhledávání: '"Kornelie Frech"'
Publikováno v:
Nucleic Acids Research
LitInspector is a literature search tool providing gene and signal transduction pathway mining within NCBI's PubMed database. The automatic gene recognition and color coding increases the readability of abstracts and significantly speeds up literatur
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::4ac402589bf8bcae8ff8e9ca93dd795a
https://doi.org/10.1093/nar/gkp303
https://doi.org/10.1093/nar/gkp303
Publikováno v:
Bioinformatics. 14:290-294
MOTIVATION: DIALIGN is a new method for pairwise as well as multiple alignment of nucleic acid and protein sequences. While standard alignment programs rely on comparing single residues and imposing gap penalties, DIALIGN constructs alignments by com
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::f704f514dafaec3a5a290e18c39b5d4b
https://doi.org/10.1093/bioinformatics/14.3.290
https://doi.org/10.1093/bioinformatics/14.3.290
Autor:
Jürgen H. Blusch, Manuela Haltmeier, Ingrid Sander, Christine Leib-Mösch, Kornelie Frech, Ruth Brack-Werner, Thomas Werner
Publikováno v:
Genomics. 43:52-61
The current genome sequencing projects reveal megabases of unknown genomic sequences. About 1% of these sequences can be expected to be of retroviral origin. These are often severely deleted or mutated. Therefore, identification of the retroviral ori
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::cd8e6fa60da380a347d11920be6edc63
https://doi.org/10.1006/geno.1997.4790
https://doi.org/10.1006/geno.1997.4790
Publikováno v:
Bioinformatics. 13:89-97
The detection of transcription control elements in DNA sequences became both more important and more complicated by the completion of the first full genome sequencing projects. Rapid evaluation of potential regulatory elements in large amounts of seq
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::546751254d2ae39e7fa43341ddc513d8
https://doi.org/10.1093/bioinformatics/13.1.89
https://doi.org/10.1093/bioinformatics/13.1.89
Publikováno v:
Virology. 224(1):256-267
Retroviruses are expressed under the control of viral control regions designated long terminal repeats (LTRs), which contain all signals for transcriptional initiation as well as transcriptional termination. However, retroviral LTRs from different sp
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::89da88feb9c37e24fd5c44974af5a0b6
Publikováno v:
Bioinformatics. 12:71-80
We present an algorithm to identify potential functional elements like protein binding sites in DNA sequences, solely from nucleotide sequence data. Prerequisites are a set of at least seven not closely related sequences with a common biological func
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::07a86c2a245d79563072cce2f0f529d9
https://doi.org/10.1093/bioinformatics/12.1.71
https://doi.org/10.1093/bioinformatics/12.1.71
Publikováno v:
Nucleic Acids Research. 23:4878-4884
The identification of potential regulatory motifs in new sequence data is increasingly important for experimental design. Those motifs are commonly located by matches to IUPAC strings derived from consensus sequences. Although this method is simple a
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::758a615ca0e1ef2096860f77a661ecd2
https://doi.org/10.1093/nar/23.23.4878
https://doi.org/10.1093/nar/23.23.4878
Publikováno v:
Bioinformatics: From Nucleic Acids and Proteins to Cell Metabolism
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_________::dd58cb027347ddb7b739fd0c875e5162
https://doi.org/10.1002/9783527615193.ch4
https://doi.org/10.1002/9783527615193.ch4
Autor:
Kornelie Frech, Korbinian Grote, Thomas Werner, M. Haltmeier, Andreas Klingenhoff, Matthias Frisch, Kerstin Cartharius, M. Bayerlein, Bernward Klocke
Publikováno v:
Bioinformatics (Oxford, England). 21(13)
Motivation: Promoter analysis is an essential step on the way to identify regulatory networks. A prerequisite for successful promoter analysis is the prediction of potential transcription factor binding sites (TFBS) with reasonable accuracy. The next
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::341e78490f158c60954a2ccb37ac4ac3
https://pubmed.ncbi.nlm.nih.gov/15860560
https://pubmed.ncbi.nlm.nih.gov/15860560
Autor:
Kornelie Frech, Thomas Werner, Ines Liebich, Kerstin Cartharius, Andreas Klingenhoff, Matthias Frisch
Publikováno v:
Genome Res. 12, 349-354 (2002)
Scaffold/matrix attachment regions (S/MARs) are essential regulatory DNA elements of eukaryotic cells. They are major determinants of locus control of gene expression and can shield gene expression from position effects. Experimental detection of S/M
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::633be4e83dcd3cbe95a0e383b0fb4ff1
https://pubmed.ncbi.nlm.nih.gov/11827955
https://pubmed.ncbi.nlm.nih.gov/11827955