Application of next generation sequencing in clinical microbiology and infection prevention.

Autor: Deurenberg RH; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, The Netherlands., Bathoorn E; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, The Netherlands., Chlebowicz MA; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, The Netherlands., Couto N; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, The Netherlands., Ferdous M; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, The Netherlands., García-Cobos S; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, The Netherlands., Kooistra-Smid AM; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, The Netherlands; Certe, Department of Medical Microbiology, Groningen, The Netherlands., Raangs EC; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, The Netherlands., Rosema S; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, The Netherlands., Veloo AC; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, The Netherlands., Zhou K; State Key Laboratory for Diagnosis and Treatment of Infectious Diseases, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, The First Affiliated Hospital of Medicine School, Zhejiang University, Hangzhou, China., Friedrich AW; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, The Netherlands., Rossen JW; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, The Netherlands. Electronic address: j.w.a.rossen@rug.nl.

Publikováno v: Journal of biotechnology [J Biotechnol] 2017 Feb 10; Vol. 243, pp. 16-24. Date of Electronic Publication: 2016 Dec 29.

Molecular characterization and phylogeny of Shiga toxin-producing Escherichia coli isolates obtained from two Dutch regions using whole genome sequencing.

Autor: Ferdous M; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands., Friedrich AW; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands., Grundmann H; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands., de Boer RF; Department of Medical Microbiology, Certe Laboratory for Infectious Diseases, Groningen, The Netherlands., Croughs PD; Star-MDC, Rotterdam, The Netherlands., Islam MA; Department of Psychiatry, Rob Giel Research Center, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands., Kluytmans-van den Bergh MF; Julius Center for Health Sciences and Primary Care, UMC Utrecht, Utrecht, The Netherlands; Amphia Academy Infectious Disease Foundation, Amphia Hospital, Breda, The Netherlands., Kooistra-Smid AM; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands; Department of Medical Microbiology, Certe Laboratory for Infectious Diseases, Groningen, The Netherlands., Rossen JW; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, The Netherlands. Electronic address: j.rossen@umcg.nl.

Publikováno v: Clinical microbiology and infection : the official publication of the European Society of Clinical Microbiology and Infectious Diseases [Clin Microbiol Infect] 2016 Jul; Vol. 22 (7), pp. 642.e1-9. Date of Electronic Publication: 2016 Apr 04.

Is Shiga Toxin-Negative Escherichia coli O157:H7 Enteropathogenic or Enterohemorrhagic Escherichia coli? Comprehensive Molecular Analysis Using Whole-Genome Sequencing.

Autor: Ferdous M; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands., Zhou K; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands., Mellmann A; Institute of Hygiene, University Hospital Münster, Münster, Germany., Morabito S; Department of Veterinary Public Health and Food Safety, Istituto Superiore di Sanità, Rome, Italy., Croughs PD; Star-MDC, Rotterdam, the Netherlands., de Boer RF; Certe Laboratory for Infectious Diseases, Groningen, the Netherlands., Kooistra-Smid AM; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands Certe Laboratory for Infectious Diseases, Groningen, the Netherlands., Rossen JW; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands j.rossen@umcg.nl., Friedrich AW; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.

Publikováno v: Journal of clinical microbiology [J Clin Microbiol] 2015 Nov; Vol. 53 (11), pp. 3530-8. Date of Electronic Publication: 2015 Aug 26.

Assessing the public health risk of Shiga toxin-producing Escherichia coli by use of a rapid diagnostic screening algorithm.

Autor: de Boer RF; Department of Research and Development, Certe Laboratory for Infectious Diseases, Groningen, the Netherlands Department of Medical Microbiology, Certe Laboratory for Infectious Diseases, Groningen, the Netherlands r.deboer@certe.nl., Ferdous M; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands., Ott A; Department of Medical Microbiology, Certe Laboratory for Infectious Diseases, Groningen, the Netherlands Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands., Scheper HR; Department of Medical Microbiology, Certe Laboratory for Infectious Diseases, Groningen, the Netherlands., Wisselink GJ; Department of Research and Development, Certe Laboratory for Infectious Diseases, Groningen, the Netherlands., Heck ME; Center of Infectious Disease Control, National Institute for Public Health and the Environment, Bilthoven, the Netherlands., Rossen JW; Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands., Kooistra-Smid AM; Department of Research and Development, Certe Laboratory for Infectious Diseases, Groningen, the Netherlands Department of Medical Microbiology, Certe Laboratory for Infectious Diseases, Groningen, the Netherlands Department of Medical Microbiology, University of Groningen, University Medical Center Groningen, Groningen, the Netherlands.

Publikováno v: Journal of clinical microbiology [J Clin Microbiol] 2015 May; Vol. 53 (5), pp. 1588-98. Date of Electronic Publication: 2015 Mar 04.

The KIzSS network, a sentinel surveillance system for infectious diseases in day care centers: study protocol.

Autor: Enserink R; Center for Infectious Disease Control Epidemiology and Surveillance Unit, National Institute for Public Health and the Environment RIVM, Bilthoven, The Netherlands. remko.enserink@rivm.nl, Noel H, Friesema IH, de Jager CM, Kooistra-Smid AM, Kortbeek LM, Duizer E, van der Sande MA, Smit HA, Pelt Wv

Publikováno v: BMC infectious diseases [BMC Infect Dis] 2012 Oct 15; Vol. 12, pp. 259. Date of Electronic Publication: 2012 Oct 15.