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pro vyhledávání: '"Koo, Da Chen Emily"'
Epistemic AI accelerates biomedical discovery by finding hidden connections in the network of biomedical knowledge. The Epistemic AI web-based software platform embodies the concept of knowledge mapping, an interactive process that relies on a knowle
Externí odkaz:
http://arxiv.org/abs/2201.11331
Autor:
Zhou, Naihui, Jiang, Yuxiang, Bergquist, Timothy R, Lee, Alexandra J, Kacsoh, Balint Z, Crocker, Alex W, Lewis, Kimberley A, Georghiou, George, Nguyen, Huy N, Hamid, Md Nafiz, Davis, Larry, Dogan, Tunca, Atalay, Volkan, Rifaioglu, Ahmet S, Dalkıran, Alperen, Cetin Atalay, Rengul, Zhang, Chengxin, Hurto, Rebecca L, Freddolino, Peter L, Zhang, Yang, Bhat, Prajwal, Supek, Fran, Fernández, José M, Gemovic, Branislava, Perovic, Vladimir R, Davidović, Radoslav S, Sumonja, Neven, Veljkovic, Nevena, Asgari, Ehsaneddin, Mofrad, Mohammad RK, Profiti, Giuseppe, Savojardo, Castrense, Martelli, Pier Luigi, Casadio, Rita, Boecker, Florian, Schoof, Heiko, Kahanda, Indika, Thurlby, Natalie, McHardy, Alice C, Renaux, Alexandre, Saidi, Rabie, Gough, Julian, Freitas, Alex A, Antczak, Magdalena, Fabris, Fabio, Wass, Mark N, Hou, Jie, Cheng, Jianlin, Wang, Zheng, Romero, Alfonso E, Paccanaro, Alberto, Yang, Haixuan, Goldberg, Tatyana, Zhao, Chenguang, Holm, Liisa, Törönen, Petri, Medlar, Alan J, Zosa, Elaine, Borukhov, Itamar, Novikov, Ilya, Wilkins, Angela, Lichtarge, Olivier, Chi, Po-Han, Tseng, Wei-Cheng, Linial, Michal, Rose, Peter W, Dessimoz, Christophe, Vidulin, Vedrana, Dzeroski, Saso, Sillitoe, Ian, Das, Sayoni, Lees, Jonathan Gill, Jones, David T, Wan, Cen, Cozzetto, Domenico, Fa, Rui, Torres, Mateo, Warwick Vesztrocy, Alex, Rodriguez, Jose Manuel, Tress, Michael L, Frasca, Marco, Notaro, Marco, Grossi, Giuliano, Petrini, Alessandro, Re, Matteo, Valentini, Giorgio, Mesiti, Marco, Roche, Daniel B, Reeb, Jonas, Ritchie, David W, Aridhi, Sabeur, Alborzi, Seyed Ziaeddin, Devignes, Marie-Dominique, Koo, Da Chen Emily, Bonneau, Richard, Gligorijević, Vladimir, Barot, Meet, Fang, Hai, Toppo, Stefano, Lavezzo, Enrico
Publikováno v:
Genome biology, vol 20, iss 1
BACKGROUND:The Critical Assessment of Functional Annotation (CAFA) is an ongoing, global, community-driven effort to evaluate and improve the computational annotation of protein function. RESULTS:Here, we report on the results of the third CAFA chall
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=dedup_wf_001::be043e675e6dbbc59e8700a00783d11e
https://escholarship.org/uc/item/0zt8n2q8
https://escholarship.org/uc/item/0zt8n2q8
Autor:
Naihui Zhou, Yuxiang Jiang, Bergquist, Timothy, Lee, Alexandra, Balint Kacsoh, Crocker, Alex, Lewis, Kimberley, Georghiou, George, Nguyen, Huy, Md Nafiz Hamid, Davis, Larry, Tunca Dogan, Atalay, Volkan, Rifaioglu, Ahmet, Dalkıran, Alperen, Rengul Cetin Atalay, Chengxin Zhang, Hurto, Rebecca, Freddolino, Peter, Zhang, Yang, Prajwal Bhat, Supek, Fran, Fernández, José, Gemovic, Branislava, Perovic, Vladimir, Davidović, Radoslav, Sumonja, Neven, Veljkovic, Nevena, Ehsaneddin Asgari, Mofrad, Mohammad, Profiti, Giuseppe, Castrense Savojardo, Martelli, Pier Luigi, Casadio, Rita, Boecker, Florian, Schoof, Heiko, Indika Kahanda, Thurlby, Natalie, McHardy, Alice, Renaux, Alexandre, Saidi, Rabie, Gough, Julian, Freitas, Alex, Antczak, Magdalena, Fabris, Fabio, Wass, Mark, Hou, Jie, Jianlin Cheng, Wang, Zheng, Romero, Alfonso, Paccanaro, Alberto, Haixuan Yang, Goldberg, Tatyana, Chenguang Zhao, Holm, Liisa, Törönen, Petri, Medlar, Alan, Zosa, Elaine, Borukhov, Itamar, Novikov, Ilya, Wilkins, Angela, Lichtarge, Olivier, Po-Han Chi, Tseng, Wei-Cheng, Linial, Michal, Rose, Peter, Dessimoz, Christophe, Vidulin, Vedrana, Saso Dzeroski, Sillitoe, Ian, Sayoni Das, Lees, Jonathan Gill, Jones, David, Wan, Cen, Cozzetto, Domenico, Fa, Rui, Torres, Mateo, Vesztrocy, Alex Warwick, Rodriguez, Jose Manuel, Tress, Michael, Frasca, Marco, Notaro, Marco, Grossi, Giuliano, Petrini, Alessandro, Re, Matteo, Valentini, Giorgio, Mesiti, Marco, Roche, Daniel, Reeb, Jonas, Ritchie, David, Sabeur Aridhi, Alborzi, Seyed Ziaeddin, Marie-Dominique Devignes, Koo, Da Chen Emily, Bonneau, Richard, Gligorijević, Vladimir, Meet Barot, Fang, Hai, Toppo, Stefano, Lavezzo, Enrico, Falda, Marco, Berselli, Michele, Tosatto, Silvio, Carraro, Marco, Piovesan, Damiano, Hafeez Ur Rehman, Qizhong Mao, Shanshan Zhang, Vucetic, Slobodan, Black, Gage, Jo, Dane, Suh, Erica, Dayton, Jonathan, Larsen, Dallas, Omdahl, Ashton, McGuffin, Liam, Brackenridge, Danielle, Babbitt, Patricia, Yunes, Jeffrey, Fontana, Paolo, Zhang, Feng, Shanfeng Zhu, Ronghui You, Zihan Zhang, Suyang Dai, Shuwei Yao, Weidong Tian, Renzhi Cao, Chandler, Caleb, Amezola, Miguel, Johnson, Devon, Chang, Jia-Ming, Wen-Hung Liao, Liu, Yi-Wei, Pascarelli, Stefano, Yotam Frank, Hoehndorf, Robert, Kulmanov, Maxat, Boudellioua, Imane, Politano, Gianfranco, Carlo, Stefano Di, Benso, Alfredo, Hakala, Kai, Ginter, Filip, Mehryary, Farrokh, Suwisa Kaewphan, Björne, Jari, Moen, Hans, Tolvanen, Martti, Salakoski, Tapio, Kihara, Daisuke, Aashish Jain, Šmuc, Tomislav, Altenhoff, Adrian, Ben-Hur, Asa, Rost, Burkhard, Brenner, Steven, Orengo, Christine, Jeffery, Constance, Bosco, Giovanni, Hogan, Deborah, Martin, Maria, O’Donovan, Claire, Mooney, Sean, Greene, Casey, Radivojac, Predrag, Friedberg, Iddo
Additional file 2 Review History.
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::1d9c48ea7ca57f4de6e206ea89173185
Akademický článek
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Autor:
Jiang, Yuxiang, Oron, Tal Ronnen, Clark, Wyatt T, Bankapur, Asma R, D'Andrea, Daniel, Lepore, Rosalba, Funk, Christopher S, Kahanda, Indika, Verspoor, Karin M, Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed ME, Martelli, Pier Luigi, Profiti, Giuseppe, Casadio, Rita, Cao, Renzhi, Zhong, Zhaolong, Cheng, Jianlin, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Dogan, Tunca, Hakala, Kai, Kaewphan, Suwisa, Mehryary, Farrokh, Salakoski, Tapio, Ginter, Filip, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Törönen, Petri, Koskinen, Patrik, Holm, Liisa, Chen, Ching-Tai, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T, Chapman, Samuel, Bkc, Dukka, Khan, Ishita K, Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Stern, Amos, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E, Hieta, Reija, Legge, Duncan, Lovering, Ruth C, Magrane, Michele, Melidoni, Anna N, Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Zakeri, Pooya, ElShal, Sarah, Tranchevent, Léon-Charles, Das, Sayoni, Dawson, Natalie L, Lee, David, Lees, Jonathan G, Sillitoe, Ian, Bhat, Prajwal, Nepusz, Tamás, Romero, Alfonso E, Sasidharan, Rajkumar, Yang, Haixuan, Paccanaro, Alberto, Gillis, Jesse, Sedeño-Cortés, Adriana E, Pavlidis, Paul, Feng, Shou, Cejuela, Juan M, Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Gabaldon, Toni, Marcet-Houben, Marina, Supek, Fran, Gong, Qingtian, Ning, Wei, Zhou, Yuanpeng, Tian, Weidong, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Ferrari, Carlo, Giollo, Manuel
Publikováno v:
Genome biology, vol 17, iss 1
BackgroundA major bottleneck in our understanding of the molecular underpinnings of life is the assignment of function to proteins. While molecular experiments provide the most reliable annotation of proteins, their relatively low throughput and rest
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=od_______325::81159c10cff6594beb8cd58596d4e880
https://escholarship.org/uc/item/8g27j6mx
https://escholarship.org/uc/item/8g27j6mx
Autor:
Yuxiang Jiang, Oron, Tal Ronnen, Clark, Wyatt T., Bankapur, Asma R., D’Andrea, Daniel, Lepore, Rosalba, Funk, Christopher S., Indika Kahanda, Verspoor, Karin M., Ben-Hur, Asa, Koo, Da Chen Emily, Penfold-Brown, Duncan, Shasha, Dennis, Youngs, Noah, Bonneau, Richard, Lin, Alexandra, Sahraeian, Sayed M. E., Martelli, Pier Luigi, Profiti, Giuseppe, Casadio, Rita, Renzhi Cao, Zhaolong Zhong, Jianlin Cheng, Altenhoff, Adrian, Skunca, Nives, Dessimoz, Christophe, Tunca Dogan, Hakala, Kai, Suwisa Kaewphan, Mehryary, Farrokh, Salakoski, Tapio, Ginter, Filip, Fang, Hai, Smithers, Ben, Oates, Matt, Gough, Julian, Törönen, Petri, Koskinen, Patrik, Holm, Liisa, Ching-Tai Chen, Hsu, Wen-Lian, Bryson, Kevin, Cozzetto, Domenico, Minneci, Federico, Jones, David T., Chapman, Samuel, Dukka BKC, Ishita K. Khan, Kihara, Daisuke, Ofer, Dan, Rappoport, Nadav, Stern, Amos, Cibrian-Uhalte, Elena, Denny, Paul, Foulger, Rebecca E., Hieta, Reija, Legge, Duncan, Lovering, Ruth C., Magrane, Michele, Melidoni, Anna N., Mutowo-Meullenet, Prudence, Pichler, Klemens, Shypitsyna, Aleksandra, Li, Biao, Pooya Zakeri, ElShal, Sarah, Léon-Charles Tranchevent, Sayoni Das, Dawson, Natalie L., Lee, David, Lees, Jonathan G., Sillitoe, Ian, Prajwal Bhat, Nepusz, Tamás, Romero, Alfonso E., Sasidharan, Rajkumar, Haixuan Yang, Paccanaro, Alberto, Gillis, Jesse, Sedeño-Cortés, Adriana E., Pavlidis, Paul, Feng, Shou, Cejuela, Juan M., Goldberg, Tatyana, Hamp, Tobias, Richter, Lothar, Salamov, Asaf, Gabaldon, Toni, Marcet-Houben, Marina, Supek, Fran, Qingtian Gong, Ning, Wei, Yuanpeng Zhou, Weidong Tian, Falda, Marco, Fontana, Paolo, Lavezzo, Enrico, Toppo, Stefano, Ferrari, Carlo, Giollo, Manuel, Piovesan, Damiano, Tosatto, Silvio C.E., Pozo, Angela Del, Fernández, José M., Maietta, Paolo, Valencia, Alfonso, Tress, Michael L., Benso, Alfredo, Carlo, Stefano Di, Politano, Gianfranco, Savino, Alessandro, Hafeez Ur Rehman, Re, Matteo, Mesiti, Marco, Valentini, Giorgio, Bargsten, Joachim W., Dijk, Aalt D. J. Van, Gemovic, Branislava, Glisic, Sanja, Vladmir Perovic, Veljkovic, Veljko, Veljkovic, Nevena, Danillo C. Almeida-E-Silva, Vencio, Ricardo Z. N., Malvika Sharan, Vogel, Jörg, Lakesh Kansakar, Shanshan Zhang, Vucetic, Slobodan, Wang, Zheng, Sternberg, Michael J. E., Wass, Mark N., Huntley, Rachael P., Martin, Maria J., O’Donovan, Claire, Robinson, Peter N., Moreau, Yves, Tramontano, Anna, Babbitt, Patricia C., Brenner, Steven E., Linial, Michal, Orengo, Christine A., Rost, Burkhard, Greene, Casey S., Mooney, Sean D., Friedberg, Iddo, Radivojac, Predrag
A document containing a subset of CAFA2 analyses that are equivalent to those provided about the CAFA1 experiment in the CAFA1 supplement. (PDF 11100 kb)
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::440982b428057b442323a85dc6976879
Autor:
Yuxiang Jiang, Tal Ronnen Oron, Wyatt T. Clark, Asma R. Bankapur, Daniel D’Andrea, Rosalba Lepore, Christopher S. Funk, Indika Kahanda, Karin M. Verspoor, Asa Ben-Hur, Da Chen Emily Koo, Duncan Penfold-Brown, Dennis Shasha, Noah Youngs, Richard Bonneau, Alexandra Lin, Sayed M. E. Sahraeian, Pier Luigi Martelli, Giuseppe Profiti, Rita Casadio, Renzhi Cao, Zhaolong Zhong, Jianlin Cheng, Adrian Altenhoff, Nives Skunca, Christophe Dessimoz, Tunca Dogan, Kai Hakala, Suwisa Kaewphan, Farrokh Mehryary, Tapio Salakoski, Filip Ginter, Hai Fang, Ben Smithers, Matt Oates, Julian Gough, Petri Törönen, Patrik Koskinen, Liisa Holm, Ching-Tai Chen, Wen-Lian Hsu, Kevin Bryson, Domenico Cozzetto, Federico Minneci, David T. Jones, Samuel Chapman, Dukka BKC, Ishita K. Khan, Daisuke Kihara, Dan Ofer, Nadav Rappoport, Amos Stern, Elena Cibrian-Uhalte, Paul Denny, Rebecca E. Foulger, Reija Hieta, Duncan Legge, Ruth C. Lovering, Michele Magrane, Anna N. Melidoni, Prudence Mutowo-Meullenet, Klemens Pichler, Aleksandra Shypitsyna, Biao Li, Pooya Zakeri, Sarah ElShal, Léon-Charles Tranchevent, Sayoni Das, Natalie L. Dawson, David Lee, Jonathan G. Lees, Ian Sillitoe, Prajwal Bhat, Tamás Nepusz, Alfonso E. Romero, Rajkumar Sasidharan, Haixuan Yang, Alberto Paccanaro, Jesse Gillis, Adriana E. Sedeño-Cortés, Paul Pavlidis, Shou Feng, Juan M. Cejuela, Tatyana Goldberg, Tobias Hamp, Lothar Richter, Asaf Salamov, Toni Gabaldon, Marina Marcet-Houben, Fran Supek, Qingtian Gong, Wei Ning, Yuanpeng Zhou, Weidong Tian, Marco Falda, Paolo Fontana, Enrico Lavezzo, Stefano Toppo, Carlo Ferrari, Manuel Giollo, Damiano Piovesan, Silvio C.E. Tosatto, Angela del Pozo, José M. Fernández, Paolo Maietta, Alfonso Valencia, Michael L. Tress, Alfredo Benso, Stefano Di Carlo, Gianfranco Politano, Alessandro Savino, Hafeez Ur Rehman, Matteo Re, Marco Mesiti, Giorgio Valentini, Joachim W. Bargsten, Aalt D. J. van Dijk, Branislava Gemovic, Sanja Glisic, Vladmir Perovic, Veljko Veljkovic, Nevena Veljkovic, Danillo C. Almeida-e-Silva, Ricardo Z. N. Vencio, Malvika Sharan, Jörg Vogel, Lakesh Kansakar, Shanshan Zhang, Slobodan Vucetic, Zheng Wang, Michael J. E. Sternberg, Mark N. Wass, Rachael P. Huntley, Maria J. Martin, Claire O’Donovan, Peter N. Robinson, Yves Moreau, Anna Tramontano, Patricia C. Babbitt, Steven E. Brenner, Michal Linial, Christine A. Orengo, Burkhard Rost, Casey S. Greene, Sean D. Mooney, Iddo Friedberg, Predrag Radivojac
Publikováno v:
Repositorio Institucional de la Consejería de Sanidad de la Comunidad de Madrid
Consejería de Sanidad de la Comunidad de Madrid
Genome Biology
Genome Biology, 17 (1)
17:184
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Genome Biology, vol. 17, no. 1, pp. 184
Recercat. Dipósit de la Recerca de Catalunya
instname
Repisalud
Instituto de Salud Carlos III (ISCIII)
Genome Biology 17 (2016) 1
Genome Biology, 17(1)
Consejería de Sanidad de la Comunidad de Madrid
Genome Biology
Genome Biology, 17 (1)
17:184
Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual)
Universidade de São Paulo (USP)
instacron:USP
Genome Biology, vol. 17, no. 1, pp. 184
Recercat. Dipósit de la Recerca de Catalunya
instname
Repisalud
Instituto de Salud Carlos III (ISCIII)
Genome Biology 17 (2016) 1
Genome Biology, 17(1)
BACKGROUND: A major bottleneck in our understanding of the molecular underpinnings of life is the assignment of function to proteins. While molecular experiments provide the most reliable annotation of proteins, their relatively low throughput and re
Externí odkaz:
https://explore.openaire.eu/search/publication?articleId=doi_dedup___::ec8a6a0d9eaae66e982189e622e9e4d4
http://hdl.handle.net/10449/37272
http://hdl.handle.net/10449/37272
Autor:
Zhou N; Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, USA.; Program in Bioinformatics and Computational Biology, Ames, IA, USA., Jiang Y; Indiana University Bloomington, Bloomington, Indiana, USA., Bergquist TR; Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA., Lee AJ; Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USA., Kacsoh BZ; Geisel School of Medicine at Dartmouth, Hanover, NH, USA.; Department of Molecular and Systems Biology, Hanover, NH, USA., Crocker AW; Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA., Lewis KA; Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA., Georghiou G; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom., Nguyen HN; Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, USA.; Program in Computer Science, Ames, IA, USA., Hamid MN; Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, USA.; Program in Bioinformatics and Computational Biology, Ames, IA, USA., Davis L; Program in Bioinformatics and Computational Biology, Ames, IA, USA., Dogan T; Department of Computer Engineering, Hacettepe University, Ankara, Turkey.; European Molecular Biolo gy Labora tory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK., Atalay V; Department of Computer Engineering, Middle East Technical University (METU), Ankara, Turkey., Rifaioglu AS; Department of Computer Engineering, Middle East Technical University (METU), Ankara, Turkey.; Department of Computer Engineering, Iskenderun Technical University, Hatay, Turkey., Dalkıran A; Department of Computer Engineering, Middle East Technical University (METU), Ankara, Turkey., Cetin Atalay R; CanSyL, Graduate School of Informatics, Middle East Technical University, Ankara, Turkey., Zhang C; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA., Hurto RL; Department of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA., Freddolino PL; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.; Department of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA., Zhang Y; Department of Computational Medicine and Bioinformatics, University of Michigan, Ann Arbor, MI, USA.; Department of Biological Chemistry, University of Michigan, Ann Arbor, MI, USA., Bhat P; Achira Labs, Bangalore, India., Supek F; Institute for Research in Biomedicine (IRB Barcelona), Barcelona, Spain.; Institució Catalana de Recerca i Estudis Avançats (ICREA), Barcelona, Spain., Fernández JM; INB Coordination Unit, Life Sciences Department, Barcelona Supercomputing Center, Barcelona, Catalonia, Spain.; (former) INB GN2, Structural and Computational Biology Programme, Spanish National Cancer Research Centre, Barcelona, Catalonia, Spain., Gemovic B; Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia., Perovic VR; Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia., Davidović RS; Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia., Sumonja N; Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia., Veljkovic N; Laboratory for Bioinformatics and Computational Chemistry, Institute of Nuclear Sciences VINCA, University of Belgrade, Belgrade, Serbia., Asgari E; Molecular Cell Biomechanics Laboratory, Departments of Bioengineering, University of California Berkeley, Berkeley, CA, USA.; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Berkeley, CA, USA., Mofrad MRK; Departments of Bioengineering and Mechanical Engineering, Berkeley, CA, USA., Profiti G; Bologna Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy.; National Research Council, IBIOM, Bologna, Italy., Savojardo C; Bologna Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy., Martelli PL; Bologna Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy., Casadio R; Bologna Biocomputing Group, Department of Pharmacy and Biotechnology, University of Bologna, Bologna, Italy., Boecker F; University of Bonn: INRES Crop Bioinformatics, Bonn, North Rhine-Westphalia, Germany., Schoof H; INRES Crop Bioinformatics, University of Bonn, Bonn, Germany., Kahanda I; Gianforte School of Computing, Montana State University, Bozeman, Montana, USA., Thurlby N; University of Bristol, Computer Science, Bristol, Bristol, United Kingdom., McHardy AC; Computational Biology of Infection Research, Helmholtz Centre for Infection Research, Brunswick, Germany.; RESIST, DFG Cluster of Excellence 2155, Brunswick, Germany., Renaux A; Interuniversity Institute of Bioinformatics in Brussels, Université libre de Bruxelles - Vrije Universiteit Brussel, Brussels, Belgium.; Machine Learning Group, Université libre de Bruxelles, Brussels, Belgium.; Artificial Intelligence lab, Vrije Universiteit Brussel, Brussels, Belgium., Saidi R; European Molecular Biolo gy Labora tory, European Bioinformatics Institute (EMBL-EBI), Cambridge, UK., Gough J; MRC Laboratory of Molecular Biology, Cambridge, United Kingdom., Freitas AA; University of Kent, School of Computing, Canterbury, United Kingdom., Antczak M; School of Biosciences, University of Kent, Canterbury, Kent, United Kingdom., Fabris F; University of Kent, School of Computing, Canterbury, United Kingdom., Wass MN; School of Biosciences, University of Kent, Canterbury, Kent, United Kingdom., Hou J; University of Missouri, Computer Science, Columbia, Missouri, USA.; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA., Cheng J; Department of Electrical Engineering and Computer Science, University of Missouri, Columbia, MO, USA., Wang Z; University of Miami, Coral Gables, Florida, USA., Romero AE; Centre for Systems and Synthetic Biology, Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, United Kingdom., Paccanaro A; Centre for Systems and Synthetic Biology, Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, United Kingdom., Yang H; School of Mathematics, Statistics and Applied Mathematics, National University of Ireland, Galway, Galway, Ireland.; Technical University of Munich, Garching, Germany., Goldberg T; Department of Informatics, Bioinformatics & Computational Biology-i12, Technische Universitat Munchen, Munich, Germany., Zhao C; Faculty for Informatics, Garching, Germany.; Department for Bioinformatics and Computational Biology, Garching, Germany.; School of Computing Sciences and Computer Engineering, Hattiesburg, Mississippi, USA., Holm L; Institute of Biotechnology, Helsinki Institute of Life Sciences, University of Helsinki, Finland, Helsinki, Finland., Törönen P; Institute of Biotechnology, Helsinki Institute of Life Sciences, University of Helsinki, Finland, Helsinki, Finland., Medlar AJ; Institute of Biotechnology, Helsinki Institute of Life Sciences, University of Helsinki, Finland, Helsinki, Finland., Zosa E; Institute of Biotechnology, University of Helsinki, Helsinki, Finland., Borukhov I; Compugen Ltd., Holon, Israel., Novikov I; Baylor College of Medicine, Department of Biochemistry and Molecular Biology, Houston, TX, USA., Wilkins A; Baylor College of Medicine, Department of Molecular and Human Genetics, Houston, TX, USA., Lichtarge O; Baylor College of Medicine, Department of Molecular and Human Genetics, Houston, TX, USA., Chi PH; National TsingHua University, Hsinchu, Taiwan., Tseng WC; Department of Electrical Engineering in National Tsing Hua University, Hsinchu City, Taiwan., Linial M; The Hebrew University of Jerusalem, Jerusalem, Israel., Rose PW; University of California San Diego, San Diego Supercomputer Center, La Jolla, California, USA., Dessimoz C; Department of Computational Biology and Center for Integrative Genomics, University of Lausanne, Lausanne, Switzerland.; Department of Genetics, Evolution & Environment, and Department of Computer Science, University College London, London, UK.; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Vidulin V; Department of Knowledge Technologies, Jozef Stefan Institute, Ljubljana, Slovenia., Dzeroski S; Jozef Stefan Institute, Ljubljana, Slovenia.; Jozef Stefan International Postgraduate School, Ljubljana, Slovenia., Sillitoe I; Research Department of Structural and Molecular Biology, University College London, London, England., Das S; Research Department of Structural and Molecular Biology, University College London, London, United Kingdom., Lees JG; Research Department of Structural and Molecular Biology, University College London, London, United Kingdom.; Department of Health and Life Sciences, Oxford Brookes University, London, UK., Jones DT; The Francis Crick Institute, Biomedical Data Science Laboratory, London, United Kingdom.; Department of Genetics, Evolution and Environment, University College London, Gower Street, London, WC1E 6BT, United Kingdom., Wan C; Department of Computer Science, University College London, London, United Kingdom.; The Francis Crick Institute, Biomedical Data Science Laboratory, London, United Kingdom., Cozzetto D; Department of Computer Science, University College London, London, United Kingdom.; The Francis Crick Institute, Biomedical Data Science Laboratory, London, United Kingdom., Fa R; Department of Computer Science, University College London, London, United Kingdom.; The Francis Crick Institute, Biomedical Data Science Laboratory, London, United Kingdom., Torres M; Centre for Systems and Synthetic Biology, Department of Computer Science, Royal Holloway, University of London, Egham, Surrey, United Kingdom., Warwick Vesztrocy A; Department of Genetics, Evolution and Environment, University College London, Gower Street, London, WC1E 6BT, United Kingdom.; SIB Swiss Institute of Bioinformatics, Lausanne, 1015, Switzerland., Rodriguez JM; Cardiovascular Proteomics Laboratory, Centro Nacional de Investigaciones Cardiovasculares Carlos III (CNIC), Madrid, Spain., Tress ML; Spanish National Cancer Research Centre (CNIO), Madrid, Spain., Frasca M; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy., Notaro M; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy., Grossi G; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy., Petrini A; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy., Re M; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy., Valentini G; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy., Mesiti M; Università degli Studi di Milano - Computer Science Department - AnacletoLab, Milan, Milan, Italy.; Institut de Biologie Computationnelle, LIRMM, CNRS-UMR 5506, Universite de Montpellier, Montpellier, France., Roche DB; Department of Informatics, Bioinformatics and Computational Biology-i12, Technische Universitat Munchen, Munich, Germany., Reeb J; Department of Informatics, Bioinformatics and Computational Biology-i12, Technische Universitat Munchen, Munich, Germany., Ritchie DW; University of Lorraine, CNRS, Inria, LORIA, Nancy, 54000, France., Aridhi S; University of Lorraine, CNRS, Inria, LORIA, Nancy, 54000, France., Alborzi SZ; University of Lorraine, CNRS, Inria, LORIA, Nancy, 54000, France.; Inria, Nancy, France., Devignes MD; University of Lorraine, CNRS, Inria, LORIA, Nancy, 54000, France.; University of Lorraine, Nancy, Lorraine, France.; Inria, Nancy, France., Koo DCE; Department of Biology, New York University, New York, NY, USA., Bonneau R; NYU Center for Data Science, New York, 10010, NY, USA.; Flatiron Institute, CCB, New York, 10010, NY, USA., Gligorijević V; Center for Computational Biology (CCB), Flatiron Institute, Simons Foundation, New York, New York, USA., Barot M; Center for Data Science, New York University, New York, 10011, NY, USA., Fang H; Wellcome Centre for Human Genetics, University of Oxford, Oxford, UK., Toppo S; Department of Molecular Medicine, University of Padova, Padova, Italy., Lavezzo E; Department of Molecular Medicine, University of Padova, Padova, Italy., Falda M; Department of Biology, University of Padova, Padova, Italy., Berselli M; Department of Molecular Medicine, University of Padova, Padova, Italy., Tosatto SCE; CNR Institute of Neuroscience, Padova, Italy.; Department of Biomedical Sciences, University of Padua, Padova, Italy., Carraro M; Department of Biomedical Sciences, University of Padua, Padova, Italy., Piovesan D; Department of Biomedical Sciences, University of Padua, Padova, Italy., Ur Rehman H; Department of Computer Science, National University of Computer and Emerging Sciences, Peshawar, Khyber Pakhtoonkhwa, Pakistan., Mao Q; Department of Computer and Information Sciences, Temple University, Philadelphia, PA, USA.; University of California, Riverside, Philadelphia, PA, USA., Zhang S; Department of Computer and Information Sciences, Temple University, Philadelphia, PA, USA., Vucetic S; Department of Computer and Information Sciences, Temple University, Philadelphia, PA, USA., Black GS; Department of Biology, Brigham Young University, Provo, UT, USA.; Bioinformatics Research Group, Provo, UT, USA., Jo D; Department of Biology, Brigham Young University, Provo, UT, USA.; Bioinformatics Research Group, Provo, UT, USA., Suh E; Department of Biology, Brigham Young University, Provo, UT, USA., Dayton JB; Department of Biology, Brigham Young University, Provo, UT, USA.; Bioinformatics Research Group, Provo, UT, USA., Larsen DJ; Department of Biology, Brigham Young University, Provo, UT, USA.; Bioinformatics Research Group, Provo, UT, USA., Omdahl AR; Department of Biology, Brigham Young University, Provo, UT, USA.; Bioinformatics Research Group, Provo, UT, USA., McGuffin LJ; School of Biological Sciences, University of Reading, Reading, England, United Kingdom., Brackenridge DA; School of Biological Sciences, University of Reading, Reading, England, United Kingdom., Babbitt PC; Department of Pharmaceutical Chemistry, San Francisco, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, 94158, CA, USA., Yunes JM; UC Berkeley - UCSF Graduate Program in Bioengineering, University of California, San Francisco, 94158, CA, USA.; Department of Bioengineering and Therapeutic Sciences, University of California, San Francisco, 94158, CA, USA., Fontana P; Research and Innovation Center, Edmund Mach Foundation, San Michele all'Adige, Italy., Zhang F; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, Fudan University, Shanghai, Shanghai, China.; Department of Biostatistics and Computational Biology, School of Life Sciences, Fudan University, Shanghai, Shanghai, China., Zhu S; School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China.; Institute of Science and Technology for Brain-Inspired Intelligence and Shanghai Institute of Artificial Intelligence Algorithms, Fudan University, Shanghai, China.; Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education, Shanghai, China., You R; School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China.; Institute of Science and Technology for Brain-Inspired Intelligence and Shanghai Institute of Artificial Intelligence Algorithms, Fudan University, Shanghai, China.; Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education, Shanghai, China., Zhang Z; School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China.; Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education, Shanghai, China., Dai S; School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China.; Key Laboratory of Computational Neuroscience and Brain-Inspired Intelligence (Fudan University), Ministry of Education, Shanghai, China., Yao S; School of Computer Science and Shanghai Key Lab of Intelligent Information Processing, Fudan University, Shanghai, China.; Institute of Science and Technology for Brain-Inspired Intelligence and Shanghai Institute of Artificial Intelligence Algorithms, Fudan University, Shanghai, China., Tian W; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, Department of Biostatistics and Computational Biology, School of Life Sciences, Fudan University, Shanghai, Shanghai, China.; Department of Pediatrics, Brain Tumor Center, Division of Experimental Hematology and Cancer Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA., Cao R; Department of Computer Science, Pacific Lutheran University, Tacoma, WA, USA., Chandler C; Department of Computer Science, Pacific Lutheran University, Tacoma, WA, USA., Amezola M; Department of Computer Science, Pacific Lutheran University, Tacoma, WA, USA., Johnson D; Department of Computer Science, Pacific Lutheran University, Tacoma, WA, USA., Chang JM; Department of Computer Science, National Chengchi University, Taipei, Taiwan., Liao WH; Department of Computer Science, National Chengchi University, Taipei, Taiwan., Liu YW; Department of Computer Science, National Chengchi University, Taipei, Taiwan., Pascarelli S; Okinawa Institute of Science and Technology, Tancha, Okinawa, Japan., Frank Y; Tel Aviv University, Tel Aviv, Israel., Hoehndorf R; Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Jeddah, Saudi Arabia., Kulmanov M; Computer, Electrical and Mathematical Sciences & Engineering Division, Computational Bioscience Research Center, King Abdullah University of Science and Technology, Thuwal, Jeddah, Saudi Arabia., Boudellioua I; Computational Bioscience Research Center (CBRC), King Abdullah University of Science and Technology, Thuwal, Saudi Arabia.; Computer, Electrical and Mathematical Sciences Engineering Division (CEMSE), King Abdullah University of Science and Technology, Thuwal, Saudi Arabia., Politano G; Control and Computer Engineering Department, Politecnico di Torino, Torino, TO, Italy., Di Carlo S; Control and Computer Engineering Department, Politecnico di Torino, Torino, TO, Italy., Benso A; Control and Computer Engineering Department, Politecnico di Torino, Torino, TO, Italy., Hakala K; Department of Future Technologies, Turku NLP Group, University of Turku, Turku, Finland.; University of Turku Graduate School (UTUGS), Turku, Finland., Ginter F; Department of Future Technologies, Turku NLP Group, University of Turku, Turku, Finland.; University of Turku, Turku, Finland., Mehryary F; Department of Future Technologies, Turku NLP Group, University of Turku, Turku, Finland.; University of Turku Graduate School (UTUGS), Turku, Finland., Kaewphan S; Department of Future Technologies, Turku NLP Group, University of Turku, Turku, Finland.; University of Turku Graduate School (UTUGS), Turku, Finland.; Turku Centre for Computer Science (TUCS), Turku, Finland., Björne J; Department of Future Technologies, Faculty of Science and Engineering, University of Turku, Turku, FI-20014, Finland.; Turku Centre for Computer Science (TUCS), Agora, Vesilinnantie 3, Turku, FI-20500, Finland., Moen H; University of Turku, Turku, Finland., Tolvanen MEE; Department of Future Technologies, University of Turku, Turku, Finland., Salakoski T; Department of Future Technologies, Faculty of Science and Engineering, University of Turku, Turku, FI-20014, Finland.; Turku Centre for Computer Science (TUCS), Agora, Vesilinnantie 3, Turku, FI-20500, Finland., Kihara D; Department of Biological Sciences, Department of Computer Science, Purdue University, 47907, IN, USA.; Department of Pediatrics, University of Cincinnati, Cincinnati, 45229, OH, USA., Jain A; Department of Computer Science, Purdue University, West Lafayette, IN, USA., Šmuc T; Division of Electronics, Rudjer Boskovic Institute, Zagreb, Croatia., Altenhoff A; Department of Computer Science, ETH Zurich, Zurich, Switzerland.; SIB Swiss Institute of Bioinformatics, Zurich, Switzerland., Ben-Hur A; Department of Computer Science, Colorado State University, Fort Collins, CO, USA., Rost B; Department of Informatics, Bioinformatics & Computational Biology-i12, Technische Universitat Munchen, Munich, Germany.; Institute for Food and Plant Sciences WZW, Technische Universität München, Freising, Germany., Brenner SE; University of California, Berkeley, CA, USA., Orengo CA; Research Department of Structural and Molecular Biology, University College London, London, United Kingdom., Jeffery CJ; Biological Sciences, University of Illinois at Chicago, Chicago, Illinois, USA., Bosco G; Department of Molecular and Systems Biology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA., Hogan DA; Geisel School of Medicine at Dartmouth, Hanover, NH, USA.; Department of Microbiology and Immunology, Geisel School of Medicine at Dartmouth, Hanover, NH, USA., Martin MJ; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom., O'Donovan C; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Hinxton, United Kingdom., Mooney SD; Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA., Greene CS; Department of Systems Pharmacology and Translational Therapeutics, Perelman School of Medicine, University of Pennsylvania, Philadelphia, Pennsylvania, USA.; Childhood Cancer Data Lab, Alex's Lemonade Stand Foundation, Philadelphia, Pennsylvania, USA., Radivojac P; Khoury College of Computer Sciences, Northeastern University, Boston, MA, USA. predrag@northeastern.edu., Friedberg I; Veterinary Microbiology and Preventive Medicine, Iowa State University, Ames, IA, USA. idoerg@iastate.edu.
Publikováno v:
Genome biology [Genome Biol] 2019 Nov 19; Vol. 20 (1), pp. 244. Date of Electronic Publication: 2019 Nov 19.
Autor:
Jiang Y; Department of Computer Science and Informatics, Indiana University, Bloomington, IN, USA., Oron TR; Buck Institute for Research on Aging, Novato, CA, USA., Clark WT; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, USA., Bankapur AR; Department of Microbiology, Miami University, Oxford, OH, USA., D'Andrea D; University of Rome, La Sapienza, Rome, Italy., Lepore R; University of Rome, La Sapienza, Rome, Italy., Funk CS; Computational Bioscience Program, University of Colorado School of Medicine, Aurora, CO, USA., Kahanda I; Department of Computer Science, Colorado State University, Fort Collins, CO, USA., Verspoor KM; Department of Computing and Information Systems, University of Melbourne, Parkville, Victoria, Australia.; Health and Biomedical Informatics Centre, University of Melbourne, Parkville, Victoria, Australia., Ben-Hur A; Department of Computer Science, Colorado State University, Fort Collins, CO, USA., Koo da CE; Department of Biology, New York University, New York, NY, USA., Penfold-Brown D; Social Media and Political Participation Lab, New York University, New York, NY, USA.; CY Data Science, New York, NY, USA., Shasha D; Department of Computer Science, New York University, New York, NY, USA., Youngs N; CY Data Science, New York, NY, USA.; Department of Computer Science, New York University, New York, NY, USA.; Simons Center for Data Analysis, New York, NY, USA., Bonneau R; Department of Computer Science, New York University, New York, NY, USA.; Simons Center for Data Analysis, New York, NY, USA.; Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, USA., Lin A; Department of Electrical Engineering and Computer Sciences, University of California Berkeley, Berkeley, CA, USA., Sahraeian SM; Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, USA., Martelli PL; Biocomputing Group, BiGeA, University of Bologna, Bologna, Italy., Profiti G; Biocomputing Group, BiGeA, University of Bologna, Bologna, Italy., Casadio R; Biocomputing Group, BiGeA, University of Bologna, Bologna, Italy., Cao R; Computer Science Department, University of Missouri, Columbia, MO, USA., Zhong Z; Computer Science Department, University of Missouri, Columbia, MO, USA., Cheng J; Computer Science Department, University of Missouri, Columbia, MO, USA., Altenhoff A; ETH Zurich, Zurich, Switzerland.; Swiss Institute of Bioinformatics, Zurich, Switzerland., Skunca N; ETH Zurich, Zurich, Switzerland.; Swiss Institute of Bioinformatics, Zurich, Switzerland., Dessimoz C; Bioinformatics Group, Department of Computer Science, University College London, London, UK.; University of Lausanne, Lausanne, Switzerland.; Swiss Institute of Bioinformatics, Lausanne, Switzerland., Dogan T; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Hakala K; Department of Information Technology, University of Turku, Turku, Finland.; University of Turku Graduate School, University of Turku, Turku, Finland., Kaewphan S; Department of Information Technology, University of Turku, Turku, Finland.; University of Turku Graduate School, University of Turku, Turku, Finland.; Turku Centre for Computer Science, Turku, Finland., Mehryary F; Department of Information Technology, University of Turku, Turku, Finland.; University of Turku Graduate School, University of Turku, Turku, Finland., Salakoski T; Department of Information Technology, University of Turku, Turku, Finland.; Turku Centre for Computer Science, Turku, Finland., Ginter F; Department of Information Technology, University of Turku, Turku, Finland., Fang H; University of Bristol, Bristol, UK., Smithers B; University of Bristol, Bristol, UK., Oates M; University of Bristol, Bristol, UK., Gough J; University of Bristol, Bristol, UK., Törönen P; Institute of Biotechnology, University of Helsinki, Helsinki, Finland., Koskinen P; Institute of Biotechnology, University of Helsinki, Helsinki, Finland., Holm L; Institute of Biotechnology, University of Helsinki, Helsinki, Finland.; Department of Biological and Environmental Sciences, Universitity of Helsinki, Helsinki, Finland., Chen CT; Institute of Information Science, Academia Sinica, Taipei, Taiwan., Hsu WL; Institute of Information Science, Academia Sinica, Taipei, Taiwan., Bryson K; Bioinformatics Group, Department of Computer Science, University College London, London, UK., Cozzetto D; Bioinformatics Group, Department of Computer Science, University College London, London, UK., Minneci F; Bioinformatics Group, Department of Computer Science, University College London, London, UK., Jones DT; Bioinformatics Group, Department of Computer Science, University College London, London, UK., Chapman S; Department of Computational Science and Engineering, North Carolina A&T State University, Greensboro, NC, USA., Bkc D; Department of Computational Science and Engineering, North Carolina A&T State University, Greensboro, NC, USA., Khan IK; Department of Computer Science, Purdue University, West Lafayette, IN, USA., Kihara D; Department of Computer Science, Purdue University, West Lafayette, IN, USA.; Department of Biological Sciences, Purdue University, West Lafayette, IN, USA., Ofer D; Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel., Rappoport N; Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel.; School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel., Stern A; Department of Biological Chemistry, Institute of Life Sciences, The Hebrew University of Jerusalem, Jerusalem, Israel.; School of Computer Science and Engineering, The Hebrew University of Jerusalem, Jerusalem, Israel., Cibrian-Uhalte E; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Denny P; Centre for Cardiovascular Genetics, Institute of Cardiovascular Science, University College London, London, UK., Foulger RE; Centre for Cardiovascular Genetics, Institute of Cardiovascular Science, University College London, London, UK., Hieta R; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Legge D; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Lovering RC; Centre for Cardiovascular Genetics, Institute of Cardiovascular Science, University College London, London, UK., Magrane M; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Melidoni AN; Centre for Cardiovascular Genetics, Institute of Cardiovascular Science, University College London, London, UK., Mutowo-Meullenet P; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Pichler K; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Shypitsyna A; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Li B; Buck Institute for Research on Aging, Novato, CA, USA., Zakeri P; Department of Electrical Engineering, STADIUS Center for Dynamical Systems, Signal Processing and Data Analytics, KU Leuven, Leuven, Belgium.; iMinds Department Medical Information Technologies, Leuven, Belgium., ElShal S; Department of Electrical Engineering, STADIUS Center for Dynamical Systems, Signal Processing and Data Analytics, KU Leuven, Leuven, Belgium.; iMinds Department Medical Information Technologies, Leuven, Belgium., Tranchevent LC; Inserm UMR-S1052, CNRS UMR5286, Cancer Research Centre of Lyon, Lyon, France.; Université de Lyon 1, Villeurbanne, France.; Centre Léon Bérard, Lyon, France., Das S; Institute of Structural and Molecular Biology, University College London, London, UK., Dawson NL; Institute of Structural and Molecular Biology, University College London, London, UK., Lee D; Institute of Structural and Molecular Biology, University College London, London, UK., Lees JG; Institute of Structural and Molecular Biology, University College London, London, UK., Sillitoe I; Institute of Structural and Molecular Biology, University College London, London, UK., Bhat P; Cerenode Inc., Boston, MA, USA., Nepusz T; Molde University College, Molde, Norway., Romero AE; Department of Computer Science, Centre for Systems and Synthetic Biology, Royal Holloway University of London, Egham, UK., Sasidharan R; Department of Molecular, Cell and Developmental Biology, University of California at Los Angeles, Los Angeles, CA, USA., Yang H; School of Mathematics, Statistics and Applied Mathematics, National University of Ireland, Galway, Ireland., Paccanaro A; Department of Computer Science, Centre for Systems and Synthetic Biology, Royal Holloway University of London, Egham, UK., Gillis J; Stanley Institute for Cognitive Genomics Cold Spring Harbor Laboratory, New York, NY, USA., Sedeño-Cortés AE; Graduate Program in Bioinformatics, University of British Columbia, Vancouver, Canada., Pavlidis P; Department of Psychiatry and Michael Smith Laboratories, University of British Columbia, Vancouver, Canada., Feng S; Department of Computer Science and Informatics, Indiana University, Bloomington, IN, USA., Cejuela JM; Department for Bioinformatics and Computational Biology-I12, Technische Universität München, Garching, Germany., Goldberg T; Department for Bioinformatics and Computational Biology-I12, Technische Universität München, Garching, Germany., Hamp T; Department for Bioinformatics and Computational Biology-I12, Technische Universität München, Garching, Germany., Richter L; Department for Bioinformatics and Computational Biology-I12, Technische Universität München, Garching, Germany., Salamov A; DOE Joint Genome Institute, Walnut Creek, CA, USA., Gabaldon T; Bioinformatics and Genomics, Centre for Genomic Regulation, Barcelona, Spain.; Universitat Pompeu Fabra, Barcelona, Spain.; Institució Catalana de Recerca i Estudis Avançats, Barcelona, Spain., Marcet-Houben M; Bioinformatics and Genomics, Centre for Genomic Regulation, Barcelona, Spain.; Universitat Pompeu Fabra, Barcelona, Spain., Supek F; Universitat Pompeu Fabra, Barcelona, Spain.; Division of Electronics, Rudjer Boskovic Institute, Zagreb, Croatia.; EMBL/CRG Systems Biology Research Unit, Centre for Genomic Regulation, Barcelona, Spain., Gong Q; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Biostatistics and Computational Biology, School of Life Science, Fudan University, Shanghai, China.; Children's Hospital of Fudan University, Shanghai, China., Ning W; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Biostatistics and Computational Biology, School of Life Science, Fudan University, Shanghai, China.; Children's Hospital of Fudan University, Shanghai, China., Zhou Y; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Biostatistics and Computational Biology, School of Life Science, Fudan University, Shanghai, China.; Children's Hospital of Fudan University, Shanghai, China., Tian W; State Key Laboratory of Genetic Engineering, Collaborative Innovation Center of Genetics and Development, Department of Biostatistics and Computational Biology, School of Life Science, Fudan University, Shanghai, China.; Children's Hospital of Fudan University, Shanghai, China., Falda M; Department of Molecular Medicine, University of Padua, Padua, Italy., Fontana P; Research and Innovation Center, Edmund Mach Foundation, San Michele all'Adige, Italy., Lavezzo E; Department of Molecular Medicine, University of Padua, Padua, Italy., Toppo S; Department of Molecular Medicine, University of Padua, Padua, Italy., Ferrari C; Department of Information Engineering, University of Padua, Padova, Italy., Giollo M; Department of Information Engineering, University of Padua, Padova, Italy.; Department of Biomedical Sciences, University of Padua, Padova, Italy., Piovesan D; Department of Information Engineering, University of Padua, Padova, Italy., Tosatto SC; Department of Information Engineering, University of Padua, Padova, Italy., Del Pozo A; Instituto De Genetica Medica y Molecular, Hospital Universitario de La Paz, Madrid, Spain., Fernández JM; Spanish National Bioinformatics Institute, Spanish National Cancer Research Institute, Madrid, Spain., Maietta P; Structural and Computational Biology Programme, Spanish National Cancer Research Institute, Madrid, Spain., Valencia A; Structural and Computational Biology Programme, Spanish National Cancer Research Institute, Madrid, Spain., Tress ML; Structural and Computational Biology Programme, Spanish National Cancer Research Institute, Madrid, Spain., Benso A; Control and Computer Engineering Department, Politecnico di Torino, Torino, Italy., Di Carlo S; Control and Computer Engineering Department, Politecnico di Torino, Torino, Italy., Politano G; Control and Computer Engineering Department, Politecnico di Torino, Torino, Italy., Savino A; Control and Computer Engineering Department, Politecnico di Torino, Torino, Italy., Rehman HU; National University of Computer & Emerging Sciences, Islamabad, Pakistan., Re M; Anacleto Lab, Dipartimento di informatica, Università degli Studi di Milano, Milan, Italy., Mesiti M; Anacleto Lab, Dipartimento di informatica, Università degli Studi di Milano, Milan, Italy., Valentini G; Anacleto Lab, Dipartimento di informatica, Università degli Studi di Milano, Milan, Italy., Bargsten JW; Applied Bioinformatics, Bioscience, Wageningen University and Research Centre, Wageningen, Netherlands., van Dijk AD; Applied Bioinformatics, Bioscience, Wageningen University and Research Centre, Wageningen, Netherlands.; Biometris, Wageningen University, Wageningen, Netherlands., Gemovic B; Center for Multidisciplinary Research, Institute of Nuclear Sciences Vinca, University of Belgrade, Belgrade, Serbia., Glisic S; Center for Multidisciplinary Research, Institute of Nuclear Sciences Vinca, University of Belgrade, Belgrade, Serbia., Perovic V; Center for Multidisciplinary Research, Institute of Nuclear Sciences Vinca, University of Belgrade, Belgrade, Serbia., Veljkovic V; Center for Multidisciplinary Research, Institute of Nuclear Sciences Vinca, University of Belgrade, Belgrade, Serbia., Veljkovic N; Center for Multidisciplinary Research, Institute of Nuclear Sciences Vinca, University of Belgrade, Belgrade, Serbia., Almeida-E-Silva DC; Department of Computing and Mathematics FFCLRP-USP, University of Sao Paulo, Ribeirao Preto, Brazil., Vencio RZ; Department of Computing and Mathematics FFCLRP-USP, University of Sao Paulo, Ribeirao Preto, Brazil., Sharan M; Institute for Molecular Infection Biology, University of Würzburg, Würzburg, Germany., Vogel J; Institute for Molecular Infection Biology, University of Würzburg, Würzburg, Germany., Kansakar L; Department of Computer and Information Sciences, Temple University, Philadelphia, PA, USA., Zhang S; Department of Computer and Information Sciences, Temple University, Philadelphia, PA, USA., Vucetic S; Department of Computer and Information Sciences, Temple University, Philadelphia, PA, USA., Wang Z; University of Southern Mississippi, Hattiesburg, MS, USA., Sternberg MJ; Centre for Integrative Systems Biology and Bioinformatics, Department of Life Sciences, Imperial College London, London, UK., Wass MN; School of Biosciences, University of Kent, Canterbury, Kent, UK., Huntley RP; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Martin MJ; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., O'Donovan C; European Molecular Biology Laboratory, European Bioinformatics Institute, Cambridge, UK., Robinson PN; Institut für Medizinische Genetik und Humangenetik, Charité - Universitätsmedizin Berlin, Berlin, Germany., Moreau Y; Department of Electrical Engineering ESAT-SCD and IBBT-KU Leuven Future Health Department, Katholieke Universiteit Leuven, Leuven, Belgium., Tramontano A; University of Rome, La Sapienza, Rome, Italy., Babbitt PC; California Institute for Quantitative Biosciences, University of California San Francisco, San Francisco, CA, USA., Brenner SE; Department of Plant and Microbial Biology, University of California Berkeley, Berkeley, CA, USA., Linial M; Department of Chemical Biology, The Hebrew University of Jerusalem, Jerusalem, Israel., Orengo CA; Institute of Structural and Molecular Biology, University College London, London, UK., Rost B; Department for Bioinformatics and Computational Biology-I12, Technische Universität München, Garching, Germany., Greene CS; Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania, Philadelphia, PA, USA., Mooney SD; Department of Biomedical Informatics and Medical Education, University of Washington, Seattle, WA, USA., Friedberg I; Department of Microbiology, Miami University, Oxford, OH, USA. idoerg@iastate.edu.; Department of Computer Science, Miami University, Oxford, OH, USA. idoerg@iastate.edu., Radivojac P; Department of Computer Science and Informatics, Indiana University, Bloomington, IN, USA. predrag@indiana.edu.
Publikováno v:
Genome biology [Genome Biol] 2016 Sep 07; Vol. 17 (1), pp. 184. Date of Electronic Publication: 2016 Sep 07.
Autor:
Pacella MS; Department of Biomedical Engineering, Johns Hopkins University, Baltimore, Maryland, USA., Koo da CE, Thottungal RA, Gray JJ
Publikováno v:
Methods in enzymology [Methods Enzymol] 2013; Vol. 532, pp. 343-66.